Escherichia coli H22 |
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Putative Escherichia coli H22 RM systems
Ref: Fedrova,P. et al. unpublished
REBASE ref # 36455
Complete sequence: 5,029,969 bp
GenBank #: CP120563
REBASE acronym: EcoH22
Org_num: 66071
All begin P5708_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 20775 | 322 aa hypothetical protein | |||
| 20780 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | EcoH22ORF20785P |
| 20785 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.EcoH22ORF20785P |
| 20790 | S | S.EcoA6I (100% identity) | AAGNNNNNNNRTDCC | S.EcoH22ORF20785P |
| 20795 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1720 | cell division protein DamX | |||
| 1725 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoH22DamP |
| 1730 | ribulose-phosphate 3-epimerase | |||
| 2320 | DUF2556 family protein | |||
| 2325 | M | M.EcoA6ORF2670P (100% identity) | ATGCAT | M.EcoH22ORF2325P |
| 2330 | DNA-binding transcriptional regulator Fis | |||
| 5985 | DUF3850 domain-containing protein | |||
| 5990 | M | M.EcoP019ORF4829P (99% identity) | GATC | M.EcoH22ORF5990P |
| 5995 | replication endonuclease | |||
| 6525 | Com family DNA-binding transcriptional | |||
| 6530 | M | M.Eco40C21ORF6200P (100% identity) | M.EcoH22ORF6530P | |
| 6535 | ribosome-associated translation inhibitor RaiA | |||
| 9955 | phosphohydrolase | |||
| 9960 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoH22DcmP |
| 9965 | V | V.EcoTob1DcmP (100% identity) | V.EcoH22DcmP | |
| 9970 | drug/metabolite exporter YedA | |||
| 18785 | NinE family protein | |||
| 18790 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoH22ORF18790P |
| 18795 | recombination protein NinB | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21040 | 100 aa hypothetical protein | |||
| 21045 | R | EcoC9120ORF4031P (100% identity) | EcoH22ORF21050P | |
| 21050 | M | M.EcoA3II (53% identity) | M.EcoH22ORF21050BP | |
| 21055 | M | M.EcoTob1ORF1370P (43% identity) | M.EcoH22ORF21050AP | |
| 21060 | SNF2-related protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 14395 | isocitrate/isopropylmalate family dehydrogenase | |||
| 14400 | R | EcoSW4848GmrSD2P (98% identity) | EcoH22GmrSDP | |
| 14405 | recombinase family protein | |||
| 20795 | endoribonuclease SymE | |||
| 20800 | R | Eho218GmrDP (53% identity) | EcoH22GmrD2BP | |
| 20805 | R | Eho218GmrDP (40% identity) | EcoH22GmrD2AP | |
| 20810 | Rpn family recombination-promoting | |||