Escherichia coli E92 |
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Putative Escherichia coli E92 RM systems
Ref: Zhu,Q. et al. unpublished
REBASE ref # 36398
| Sequence length: | GenBank #: | |
| Chromosome: | 5,138,060 bp | CP119734 |
| plasmid pE92-1: | 231,254 bp | CP119735 |
| plasmid pE92-2: | 101,028 bp | CP119736 |
| plasmid pE92-3: | 100,459 bp | CP119737 |
| plasmid pE92-4: | 100,423 bp | CP119738 |
| plasmid pE92-5: | 80,658 bp | CP119739 |
REBASE acronym: EcoE92
Org_num: 65779
All begin P1J22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14395 | integrase core domain-containing protein | |||
| 14400 | M | M.SenS688ORF13495P (100% identity) | M.EcoE92ORF14400P | |
| 14405 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S1.EcoE92ORF14400P |
| 14410 | R | Sen12509ORF5865P (100% identity) | EcoE92ORF14400P | |
| 14415 | IS1 family transposase | |||
| 14420 | ankyrin repeat domain-containing protein | |||
| 14425 | IS3-like element IS2 family transposase | |||
| 14430 | 209 aa hypothetical protein | |||
| ??? | S | S3.Kpn4542ORF3990P (48% identity) | S2.EcoE92ORF14400P | |
| 14440 | alpha-amylase family glycosyl hydrolase | |||
| 16660 | GTPase family protein | |||
| 16665 | M | M.Kpn1678ORF16290P (100% identity) | M.EcoE92ORF16665P | |
| 16670 | S | S.EcoE94ORF16660P (100% identity) | S.EcoE92ORF16665P | |
| 16675 | R | EcoE94ORF16660P (100% identity) | EcoE92ORF16665P | |
| 16680 | IS5-like element ISKpn26 family transposase | |||
| plasmid pE92-3 | ||||
| 27655 | type II toxin-antitoxin system Phd/YefM family | |||
| 27660 | M | M.EcoE94ORF27650P (100% identity) | M.EcoE92ORF27660P | |
| 27665 | S | S.SspS13ORF175P (100% identity) | S.EcoE92ORF27660P | |
| 27670 | R | KpnLL83ORF1P (100% identity) | EcoE92ORF27660P | |
| 27675 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1905 | cell division protein DamX | |||
| 1910 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE92DamP |
| 1915 | ribulose-phosphate 3-epimerase | |||
| 2530 | DUF2556 family protein | |||
| 2535 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoE92ORF2535P |
| 2540 | DNA-binding transcriptional regulator Fis | |||
| 4575 | helix-turn-helix transcriptional regulator | |||
| 4580 | M | M.KpnYN1ORFGP (89% identity) | M.EcoE92ORF4580P | |
| 4585 | 71 aa hypothetical protein | |||
| 5835 | replication protein P | |||
| 5840 | M | M.EcoR31ORF20500P (100% identity) | M.EcoE92ORF5840P | |
| 5845 | 343 aa hypothetical protein | |||
| 8245 | 95 aa hypothetical protein | |||
| 8250 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoE92ORF8250P | |
| 8255 | DUF977 family protein | |||
| 10395 | drug/metabolite exporter YedA | |||
| 10400 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoE92DcmP |
| 10405 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoE92DcmP |
| 10410 | phosphohydrolase | |||
| 12760 | DUF2737 family protein | |||
| 12765 | M | M.EcoE94ORF7780P (100% identity) | M.EcoE92ORF12765P | |
| 12770 | ead/Ea22-like family protein | |||
| 14235 | TerB family tellurite resistance protein | |||
| 14250 | M | M.EcoE94ORF6300P (100% identity) | M.EcoE92ORF14250P | |
| 14255 | TrmB family transcriptional regulator | |||
| 15975 | 71 aa hypothetical protein | |||
| 15980 | M | M.Sen21974ORF23385P (100% identity) | M.EcoE92ORF15980P | |
| 15985 | 114 aa hypothetical protein | |||
| 17110 | replication endonuclease | |||
| 17115 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoE92ORF17115P |
| 17120 | TraR/DksA family transcriptional regulator | |||
| plasmid pE92-1 | ||||
| 25675 | DNA-binding protein | |||
| 25680 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoE92ORF25680P |
| 25685 | 284 aa hypothetical protein | |||
| 26255 | 55 aa hypothetical protein | |||
| 26260 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoE92ORF26260P |
| 26265 | thermonuclease family protein | |||
| 26800 | 48 aa hypothetical protein | |||
| 26805 | M | M.YpsF1ORFBP (100% identity) | M.EcoE92ORF26805P | |
| 26810 | 202 aa hypothetical protein | |||
| plasmid pE92-2 | ||||
| 27415 | 103 aa hypothetical protein | |||
| 27420 | M | M.Ecocq9ORF29710P (100% identity) | M.EcoE92ORF27420P | |
| 27425 | 73 aa hypothetical protein | |||
| plasmid pE92-3 | ||||
| 27775 | 43 aa hypothetical protein | |||
| 27790 | M | M.EcoEA13ORF23875P (100% identity) | M.EcoE92ORF27790P | |
| 27795 | recombination-associated protein RdgC | |||
| plasmid pE92-4 | ||||
| 28210 | 101 aa hypothetical protein | |||
| 28215 | M | M.SenBR027ORFEP (100% identity) | SAY | M.EcoE92ORF28215P |
| 28220 | 73 aa hypothetical protein | |||
| plasmid pE92-5 | ||||
| 28795 | 100 aa hypothetical protein | |||
| 28800 | M | M.EcoE94ORF28680P (100% identity) | M.EcoE92ORF28800P | |
| 28805 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5950 | recombinase family protein | |||
| 5955 | R | EcoteDMcrBP (100% identity) | EcoE92McrBP | |
| 5960 | R | EcoE94McrCP (100% identity) | EcoE92McrCP | |
| 5965 | isocitrate/isopropylmalate family dehydrogenase | |||