Escherichia coli XJ6-3 |
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Putative Escherichia coli XJ6-3 RM systems
Ref: Wang,W. unpublished
REBASE ref # 25196
| Sequence length: | GenBank #: | |
| Chromosome: | 4,876,590 bp | CP098227 |
| plasmid unnamed1: | 181,896 bp | CP098228 |
REBASE acronym: EcoXJ63
Org_num: 65809
All begin KFZ54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9340 | tyrosine-type recombinase/integrase | |||
| 9345 | R | EcoXJ34ORF9335P (100% identity) | EcoXJ63ORF9345P | |
| 9350 | M48 family metallopeptidase | |||
| 19810 | adenine/cytosine-specific restriction | |||
| 19815 | R | EcoXJ34ORF19825P (100% identity) | AACNNNNNNGTGC | EcoXJ63ORF19820P |
| 19820 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoXJ63ORF19820P |
| 19825 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoXJ63ORF19820P |
| 19830 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1860 | cell division protein DamX | |||
| 1865 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoXJ63DamP |
| 1870 | ribulose-phosphate 3-epimerase | |||
| 2390 | DUF2556 family protein | |||
| 2395 | M | M.EcoXJ34ORF2395P (100% identity) | ATGCAT | M.EcoXJ63ORF2395P |
| 2400 | DNA-binding transcriptional regulator Fis | |||
| 9020 | phosphohydrolase | |||
| 9025 | M | M.EcoXJ34DcmP (100% identity) | CCWGG | M.EcoXJ63DcmP |
| 9030 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoXJ63DcmP |
| 9035 | drug/metabolite exporter YedA | |||
| 11095 | DUF977 family protein | |||
| 11100 | M | M.EcoXJ34ORF11090P (100% identity) | M.EcoXJ63ORF11100P | |
| 11105 | 139 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 23485 | thermonuclease family protein | |||
| 23490 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoXJ63ORF23490P |
| 23495 | 55 aa hypothetical protein | |||
| 23740 | DNA-binding protein | |||
| 23745 | M | M.YpsF1ORFDP (95% identity) | M.EcoXJ63ORF23745P | |
| 23750 | 284 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19805 | GTPase | |||
| 19810 | R | SenHNK130MrrP (100% identity) | EcoXJ63MrrP | |
| 19815 | type I restriction-modification system | |||