Escherichia coli XJ34 |
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Putative Escherichia coli XJ34 RM systems
Ref: Wang,W. unpublished
REBASE ref # 25196
| Sequence length: | GenBank #: | |
| Chromosome: | 4,876,575 bp | CP098231 |
| plasmid unnamed1: | 185,577 bp | CP098232 |
| plasmid unnamed2: | 72,766 bp | CP098233 |
REBASE acronym: EcoXJ34
Org_num: 65806
All begin KFZ60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9330 | tyrosine-type recombinase/integrase | |||
| 9335 | R | EcoXJ63ORF9345P (100% identity) | EcoXJ34ORF9335P | |
| 9340 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1860 | cell division protein DamX | |||
| 1865 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoXJ34DamP |
| 1870 | ribulose-phosphate 3-epimerase | |||
| 2390 | DUF2556 family protein | |||
| 2395 | M | M.EcoXJ63ORF2395P (100% identity) | ATGCAT | M.EcoXJ34ORF2395P |
| 2400 | DNA-binding transcriptional regulator Fis | |||
| 9010 | phosphohydrolase | |||
| 9015 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.EcoXJ34DcmP |
| 9020 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoXJ34DcmP |
| 9025 | drug/metabolite exporter YedA | |||
| 11085 | DUF977 family protein | |||
| 11090 | M | M.EcoXJ63ORF11100P (100% identity) | M.EcoXJ34ORF11090P | |
| 11095 | 139 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 23485 | 55 aa hypothetical protein | |||
| 23490 | M | M.YpsF1ORFCP (84% identity) | M.EcoXJ34ORF23490P | |
| 23495 | thermonuclease family protein | |||
| 24095 | 284 aa hypothetical protein | |||
| 24100 | M | M.YpsF1ORFDP (95% identity) | M.EcoXJ34ORF24100P | |
| 24105 | DNA-binding protein | |||
| plasmid unnamed2 | ||||
| 24570 | 101 aa hypothetical protein | |||
| 24575 | M | M.SflN92ORF24820P (100% identity) | M.EcoXJ34ORF24575P | |
| 24580 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19810 | GTPase | |||
| 19815 | R | SenHNK130MrrP (100% identity) | EcoXJ34MrrP | |
| 19820 | type I restriction-modification system | |||
| 19835 | endoribonuclease SymE | |||
| 19840 | R | SenHNK130McrBP (100% identity) | EcoXJ34McrBP | |
| 19845 | R | SenHNK130McrCP (100% identity) | EcoXJ34McrCP | |
| 19850 | DEAD/DEAH box helicase | |||