Escherichia coli GN4554 |
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Putative Escherichia coli GN4554 RM systems
Ref: Seah,C. and Melano,R.G. unpublished
REBASE ref # 36362
| Sequence length: | GenBank #: | |
| Chromosome: | 4,699,772 bp | CP102694 |
| plasmid pGN4554-1: | 84,427 bp | CP102695 |
| plasmid pGN4554-2: | 67,067 bp | CP102696 |
| plasmid pGN4554-3: | 54,149 bp | CP102697 |
REBASE acronym: Eco4554
Org_num: 65691
All begin NV952_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5655 | IS1 family transposase | |||
| 5660 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco4554ORF5670P |
| 5665 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco4554ORF5670P |
| 5670 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco4554ORF5670P |
| 5675 | integrase core domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1800 | cell division protein DamX | |||
| 1805 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4554DamP |
| 1810 | ribulose-phosphate 3-epimerase | |||
| 2425 | DUF2556 family protein | |||
| 2430 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco4554ORF2430P |
| 2435 | tyrosine-type recombinase/integrase | |||
| 8850 | phosphohydrolase | |||
| 8855 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco4554DcmP |
| 8860 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco4554DcmP |
| 8865 | drug/metabolite exporter YedA | |||
| 19155 | phage lysis protein EssD | |||
| 19160 | M | M.SflN116ORF17735P (100% identity) | M.Eco4554ORF19160P | |
| 19165 | 67 aa hypothetical protein | |||
| 19195 | LexA family transcriptional regulator | |||
| 19200 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco4554ORF19200P |
| 19205 | PerC family transcriptional regulator | |||
| plasmid pGN4554-1 | ||||
| 23245 | TerB family tellurite resistance protein | |||
| 23260 | M | M.EcoUKDORF25705P (100% identity) | M.Eco4554ORF23260P | |
| 23265 | recombination-associated protein RdgC | |||
| plasmid pGN4554-2 | ||||
| 23340 | 102 aa hypothetical protein | |||
| 23345 | M | M.EcoC0010ORF24185P (99% identity) | M.Eco4554ORF23345P | |
| 23350 | 73 aa hypothetical protein | |||
| plasmid pGN4554-3 | ||||
| 23815 | 73 aa hypothetical protein | |||
| 23820 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco4554ORF23820P | |
| 23825 | 103 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14575 | replication endonuclease | |||
| 14580 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco4554ORF14580P |
| 14585 | TraR/DksA family transcriptional regulator | |||