Escherichia coli GENOMIC22-004 |
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Putative Escherichia coli GENOMIC22-004 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 36349
| Sequence length: | GenBank #: | |
| Chromosome: | 4,850,360 bp | CP119120 |
| plasmid pCFSAN126949_01: | 124,387 bp | CP119121 |
| plasmid pCFSAN126949_02: | 83,235 bp | CP119123 |
REBASE acronym: Eco22004
Org_num: 65653
All begin PYZ88_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17555 | integrase core domain-containing protein | |||
| 17560 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco22004ORF17560P |
| 17565 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco22004ORF17560P |
| 17570 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco22004ORF17560P |
| 17575 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13660 | drug/metabolite exporter YedA | |||
| 13665 | V | V.SflN116DcmP (100% identity) | CCWGG | V.Eco22004DcmP |
| 13670 | M | M.SflN116DcmP (100% identity) | CCWGG | M.Eco22004DcmP |
| 13675 | phosphohydrolase | |||
| 20770 | DNA-binding transcriptional regulator Fis | |||
| 20775 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco22004ORF20775P |
| 20780 | DUF2556 family protein | |||
| plasmid pCFSAN126949_01 | ||||
| 23775 | endonuclease III | |||
| 23780 | M | M.SfrTF18ORF14295P (100% identity) | M.Eco22004ORF23780P | |
| 23785 | CopG family transcriptional regulator | |||
| 24125 | 149 aa hypothetical protein | |||
| 24130 | M | M.Vch11614ORFCP (100% identity) | M.Eco22004ORF24130P | |
| 24135 | 120 aa hypothetical protein | |||
| plasmid pCFSAN126949_02 | ||||
| 24745 | 103 aa hypothetical protein | |||
| 24750 | M | M.Eco35152ORF24780P (100% identity) | M.Eco22004ORF24750P | |
| 24755 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9680 | recombinase family protein | |||
| 9685 | R | EcoteDMcrBP (100% identity) | Eco22004McrBP | |
| 9690 | R | EmaE2C08McrCP (100% identity) | Eco22004McrCP | |
| 9695 | isocitrate/isopropylmalate family dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8125 | TraR/DksA family transcriptional regulator | |||
| 8130 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco22004ORF8130P |
| 8135 | replication endonuclease | |||