Lactobacillus gasseri VSI26 |
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Putative Lactobacillus gasseri VSI26 RM systems
Ref: Whidbey,C. unpublished
REBASE ref # 36309
Complete sequence: 1,892,613 bp
GenBank #: CP118065
REBASE acronym: LgaVSI26
Org_num: 65481
All begin PUW60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4245 | 242 aa hypothetical protein | |||
| 4250 | M | M.LgrVSI07ORF3855P (99% identity) | M.LgaVSI26ORF4250P | |
| 4255 | S | S1.Lga7772DORF1049P (100% identity) | S1.LgaVSI26ORF4250P | |
| 4260 | tyrosine-type recombinase/integrase | |||
| 4265 | S | S1.LgrVSI07ORF3855P (45% identity) | S2.LgaVSI26ORF4250P | |
| 4270 | S | S2.LgrVSI07ORF3855P (54% identity) | S3.LgaVSI26ORF4250P | |
| 4275 | R | Lga7772DORF1049P (100% identity) | LgaVSI26ORF4250P | |
| 4280 | DUF262 domain-containing HNH endonuclease family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7020 | P27 family phage terminase small subunit | |||
| 7025 | M | M.LgaORF1480P (100% identity) | M.LgaVSI26ORF7025P | |
| 7030 | 206 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6915 | 430 aa hypothetical protein | |||
| 6920 | R | LgaORF1464P (100% identity) | CAGAG | LgaVSI26ORF6925P |
| 6925 | M | M.Lga7772DORF1899P (100% identity) | CAGAG | M.LgaVSI26ORF6925P |
| 6930 | C | C.LgaORF1464P (100% identity) | C.LgaVSI26ORF6925P | |
| 6935 | DUF2326 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 180 | exodeoxyribonuclease III | |||
| 185 | R | LgrVSI07ORF180P (99% identity) | LgaVSI26ORF185P | |
| 190 | alpha/beta hydrolase | |||
| 4275 | DEAD/DEAH box helicase family protein | |||
| 4280 | R | LgaGmrSDP (99% identity) | LgaVSI26GmrSDP | |
| 4285 | FAD-binding protein | |||