Lacticaseibacillus rhamnosus VSI43 |
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Putative Lacticaseibacillus rhamnosus VSI43 RM systems
Ref: Whidbey,C. unpublished
REBASE ref # 36309
Complete sequence: 3,006,772 bp
GenBank #: CP118050
REBASE acronym: LrhVSI43
Org_num: 65472
All begin PUW66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9620 | 268 aa hypothetical protein | |||
| 9625 | S | S.LrhLcORF2091AP (96% identity) | S2.LrhVSI43ORF9640P | |
| 9630 | site-specific integrase | |||
| 9635 | S | S.LrhLcORF2091BP (100% identity) | GGHANNNNNNNGTC | S1.LrhVSI43ORF9640P |
| 9640 | M | M.Lrh23550ORF10715P (100% identity) | M.LrhVSI43ORF9640P | |
| 9645 | R | Lrh23550ORF10715P (100% identity) | LrhVSI43ORF9640P | |
| 9650 | DUF998 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5750 | APC family permease | |||
| 5755 | M | M.LrhsA5ORFDP (100% identity) | M.LrhVSI43ORF5755P | |
| 5760 | DUF1998 domain-containing protein | |||
| 11820 | 111 aa hypothetical protein | |||
| 11825 | M | M.Lst115424ORF2461P (100% identity) | M.LrhVSI43ORF11825P | |
| 11830 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12110 | IS3 family transposase | |||
| 12115 | R | LpaF11ORF15205P (100% identity) | LrhVSI43ORF12130P | |
| 12120 | 68 aa hypothetical protein | |||
| 12125 | IS30 family transposase | |||
| 12130 | M | M.LpaF11ORF15205P (89% identity) | M.LrhVSI43ORF12130P | |
| 12135 | IS5/IS1182 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8975 | helix-turn-helix transcriptional regulator | |||
| 8980 | R | LrhsA5MrrP (100% identity) | LrhVSI43MrrP | |
| 8985 | plasmid pRiA4b ORF-3 family protein | |||