Salmonella enterica subsp. enterica serovar Dublin RM079 |
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Putative Salmonella enterica subsp. enterica serovar Dublin RM079 RM systems
Ref: Lewis,G.L. et al. unpublished
REBASE ref # 36283
Complete sequence: 4,963,124 bp
GenBank #: CP117367
REBASE acronym: SenRM079
Org_num: 65359
All begin PQQ12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21015 | 3-5 exonuclease | |||
| 21020 | S | S2.Ssp3CORF11555P (100% identity) | S2.SenRM079ORF21040P | |
| 21025 | N-6 DNA methylase | |||
| 21030 | 44 aa hypothetical protein | |||
| 21035 | restriction endonuclease | |||
| 21040 | M | M.StySBLI (100% identity) | M.SenRM079ORF21040P | |
| ??? | S | S1.Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | S1.SenRM079ORF21040P |
| 21055 | R | Ssp3CORF11555P (100% identity) | SenRM079ORF21040P | |
| 21060 | endonuclease NucS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2010 | cell division protein DamX | |||
| 2015 | M | M.SenRM079Dam3P (99% identity) | GATC | M.SenRM079Dam2P |
| 2020 | ribulose-phosphate 3-epimerase | |||
| 2500 | DUF2556 family protein | |||
| 2505 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenRM079ORF2505P |
| 2510 | DNA-binding transcriptional regulator Fis | |||
| 5685 | TraR/DksA family transcriptional regulator | |||
| 5690 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.SenRM079ORF5690P |
| 5695 | replication endonuclease | |||
| 5700 | 62 aa hypothetical protein | |||
| 5705 | 99 aa hypothetical protein | |||
| 5710 | 268 aa hypothetical protein | |||
| 5715 | 60 aa hypothetical protein | |||
| 5720 | R | SenRM111ORF5460P (100% identity) | SenRM079ORF5690P | |
| 5725 | HEPN domain-containing protein | |||
| 9335 | 249 aa hypothetical protein | |||
| 9340 | M | M.Ssp3CORF22905P (100% identity) | M.SenRM079ORF9340P | |
| 9345 | ead/Ea22-like family protein | |||
| 9415 | PerC family transcriptional regulator | |||
| 9420 | M | M.Ssp3CORF22825P (100% identity) | GATC | M.SenRM079ORF9420P |
| 9425 | RusA family crossover junction | |||
| 14260 | ribulose-phosphate 3-epimerase | |||
| 14265 | M | M.SenRM043DamP (100% identity) | GATC | M.SenRM079Dam3P |
| 14270 | cell division protein DamX | |||
| 14670 | drug/metabolite exporter YedA | |||
| 14675 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.SenRM079DcmP |
| 14680 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.SenRM079DcmP |
| 14685 | phosphohydrolase | |||
| 15460 | DUF550 domain-containing protein | |||
| 15465 | M | M.Ssp3CORF17125P (100% identity) | M.SenRM079ORF15465P | |
| 15470 | ead/Ea22-like family protein | |||
| 21170 | YebC/PmpR family DNA-binding transcriptional | |||
| 21175 | R | SspSAL045ORF19515P (100% identity) | GAAC | SenRM079ORF21175P |
| 21180 | IS3 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18820 | small effector SsaA | |||
| 18825 | R | Ssp3CORF13760P (100% identity) | CAGAG | SenRM079ORF18830P |
| 18830 | M | M.StyUK1I (100% identity) | CAGAG | M.SenRM079ORF18830P |
| 18835 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21030 | 44 aa hypothetical protein | |||
| 21035 | R | Ssp3CMrrP (100% identity) | SenRM079MrrP | |
| 21040 | class I SAM-dependent DNA methyltransferase | |||