Xanthomonas campestris pv. campestris 10006 |
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Putative Xanthomonas campestris pv. campestris 10006 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
| Sequence length: | GenBank #: | |
| Chromosome: | 5,033,634 bp | CP066975 |
| plasmid unnamed: | 160,731 bp | CP066976 |
REBASE acronym: Xca10006
Org_num: 65576
All begin JH265_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6440 | M48 family metallopeptidase | |||
| 6445 | R | Xca10008ORF6460P (100% identity) | Xca10006ORF6465P | |
| 6450 | S | S2.Xca10008ORF6460P (100% identity) | S2.Xca10006ORF6465P | |
| 6455 | virulence RhuM family protein | |||
| 6460 | damage-inducible protein D | |||
| 6465 | M | M.Xca10008ORF6460P (100% identity) | M.Xca10006ORF6465P | |
| 6470 | S | S1.Xca10008ORF6460P (100% identity) | S1.Xca10006ORF6465P | |
| 6475 | 86 aa hypothetical protein | |||
| 15780 | 98 aa hypothetical protein | |||
| 15785 | R | Xca10008ORF15800P (100% identity) | GAGNNNNNNCTT | Xca10006ORF15800P |
| 15790 | S | S.Xca793ORF15865P (100% identity) | GAGNNNNNNCTT | S.Xca10006ORF15800P |
| 15795 | virulence RhuM family protein | |||
| 15800 | M | M.Xca10008ORF15800P (100% identity) | GAGNNNNNNCTT | M.Xca10006ORF15800P |
| 15805 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3080 | IS3-like element IS1404 family transposase | |||
| 3085 | R | XcaYORFAP (98% identity) | Xca10006ORF3085P | |
| 3090 | 90 aa hypothetical protein | |||
| 13010 | ATP-binding protein | |||
| 13015 | M | M.Xca10008ORF13010P (100% identity) | M.Xca10006ORF13015P | |
| 13020 | DNA repair protein RadC | |||
| plasmid unnamed | ||||
| 22105 | 192 aa hypothetical protein | |||
| 22110 | M | M.Xca12112ORF22255P (100% identity) | M.Xca10006ORF22110P | |
| 22115 | recombination-associated protein RdgC | |||
| 22160 | 214 aa hypothetical protein | |||
| 22165 | M | M.Xca12112ORF22200P (100% identity) | M.Xca10006ORF22165P | |
| 22170 | 265 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7325 | 71 aa hypothetical protein | |||
| 7330 | R | Xca5817McrBP (100% identity) | Xca10006McrBP | |
| 7335 | R | XcaCN13aMcrCP (100% identity) | Xca10006McrCP | |
| 7340 | sensor histidine kinase | |||
| 15800 | SAM-dependent DNA methyltransferase | |||
| 15805 | R | Xcacc2MrrP (100% identity) | Xca10006MrrP | |
| 15810 | type II toxin-antitoxin system RelE/ParE family | |||