Xanthomonas campestris pv. campestris 08288 |
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Putative Xanthomonas campestris pv. campestris 08288 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
Complete sequence: 5,106,871 bp
GenBank #: CP066955
REBASE acronym: Xca8288
Org_num: 65573
All begin JH309_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6350 | M48 family metallopeptidase | |||
| 6355 | R | Xca8290ORF6370P (100% identity) | CAAGNNNNNCTTA | Xca8288ORF6370P |
| 6360 | S | S.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | S.Xca8288ORF6370P |
| 6365 | damage-inducible protein D | |||
| 6370 | M | M.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | M.Xca8288ORF6370P |
| 6375 | restriction endonuclease subunit S | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16575 | BREX-1 system phosphatase PglZ type A | |||
| 16580 | RM | Xca8290ORF16595P (100% identity) | Xca8288ORF16580P | |
| 16585 | BREX system P-loop protein BrxC | |||
| 21590 | IS3 family transposase | |||
| 21595 | M | M.Xca8305ORF21175P (100% identity) | M.Xca8288ORF21595P | |
| 21600 | thymidine kinase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16115 | ATP-dependent helicase | |||
| 16120 | M | M.XcaXc86ORFDP (50% identity) | M.Xca8288ORF16120BP | |
| 16125 | IS5 family transposase | |||
| 16130 | M | M.Xca8290ORF16135AP (100% identity) | M.Xca8288ORF16120AP | |
| 16135 | R | XcaXc86ORFDP (100% identity) | Xca8288ORF16120P | |
| 16140 | type II toxin-antitoxin system RelE/ParE family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7235 | 71 aa hypothetical protein | |||
| 7240 | R | Xca8290McrBP (100% identity) | Xca8288McrBP | |
| 7245 | IS5-like element IS1478 family transposase | |||
| 7250 | R | Xcacc2McrCP (100% identity) | Xca8288McrCP | |
| 7255 | sensor histidine kinase | |||