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Putative Xanthomonas campestris pv. campestris 12112 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
Sequence length: | GenBank #: | |
Chromosome: | 5,035,393 bp | CP066939 |
plasmid unnamed: | 146,503 bp | CP066940 |
REBASE acronym: Xca12112
Org_num: 65182
All begin JH286_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
6125 | M48 family metallopeptidase | |||
6130 | R | Xca8290ORF6370P (100% identity) | CAAGNNNNNCTTA | Xca12112ORF6145P |
6135 | S | S.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | S.Xca12112ORF6145P |
6140 | damage-inducible protein D | |||
6145 | M | M.Xcacc2ORF6130P (100% identity) | CAAGNNNNNCTTA | M.Xca12112ORF6145P |
6150 | restriction endonuclease subunit S | |||
15575 | 98 aa hypothetical protein | |||
15580 | R | XcaJXORFGP (89% identity) | Xca12112ORF15595P | |
15585 | S | S.XcaJXORFGP (84% identity) | S.Xca12112ORF15595P | |
15590 | virulence RhuM family protein | |||
15595 | M | M.Xcacc2ORF16555P (100% identity) | M.Xca12112ORF15595P | |
15600 | Mrr restriction system protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
5265 | BREX system P-loop protein BrxC | |||
5270 | RM | Xca8290ORF16595P (65% identity) | Xca12112ORF5270AP | |
5275 | IS5-like element IS1478 family transposase | |||
5280 | RM | Xca8290ORF16595P (31% identity) | Xca12112ORF5270BP | |
5285 | BREX-1 system phosphatase PglZ type A | |||
12800 | 320 aa hypothetical protein | |||
12805 | R | Xci7119ORF8295P (100% identity) | CTCGAG | Xca12112ORF12810P |
12810 | M | M.Xca10103ORF10250P (99% identity) | M.Xca12112ORF12810P | |
12815 | IS3 family transposase | |||
plasmid unnamed | ||||
22195 | 265 aa hypothetical protein | |||
22200 | M | M.Xca12049ORF22715P (100% identity) | M.Xca12112ORF22200P | |
22205 | 214 aa hypothetical protein | |||
22250 | recombination-associated protein RdgC | |||
22255 | M | M.Xca12049ORF22770P (100% identity) | M.Xca12112ORF22255P | |
22260 | 192 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
20645 | alpha/beta fold hydrolase | |||
20650 | R | Xcacc2ORF915P (99% identity) | GCCAGG | Xca12112ORF20655P |
20655 | M | M.Xcacc2ORF915P (100% identity) | GCCAGG | M.Xca12112ORF20655P |
20660 | Fic family protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
7010 | 71 aa hypothetical protein | |||
7015 | R | Xcacc2McrBP (100% identity) | Xca12112McrBP | |
7020 | R | XcaCN13aMcrCP (100% identity) | Xca12112McrCP | |
7025 | sensor histidine kinase |