Xanthomonas campestris pv. campestris 10090 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xanthomonas campestris pv. campestris 10090 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
Complete sequence: 5,120,965 bp
GenBank #: CP066936
REBASE acronym: Xca10090
Org_num: 65578
All begin JH310_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6010 | M48 family metallopeptidase | |||
| 6015 | R | XcaXY11ORF6160P (100% identity) | CAAGNNNNNCTTA | Xca10090ORF6030P |
| 6020 | S | S2.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | S.Xca10090ORF6030P |
| 6025 | damage-inducible protein D | |||
| 6030 | M | M.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | M.Xca10090ORF6030P |
| 6035 | restriction endonuclease subunit S | |||
| 16375 | 98 aa hypothetical protein | |||
| 16380 | R | XcaTJORFEP (89% identity) | Xca10090ORF16395P | |
| 16385 | S | S.XcaTJORFEP (74% identity) | S.Xca10090ORF16395P | |
| 16390 | virulence RhuM family protein | |||
| 16395 | M | M.XcaTJORFEP (100% identity) | M.Xca10090ORF16395P | |
| 16400 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10515 | AAA family ATPase | |||
| 10520 | M | M.XcaYORFEP (48% identity) | M.Xca10090ORF10520P | |
| 10525 | DNA topoisomerase III | |||
| 10575 | IS3-like element IS476 family transposase | |||
| 10580 | RM | XcaSB80ORF10635P (100% identity) | Xca10090ORF10580P | |
| 10585 | DEAD/DEAH box helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16395 | SAM-dependent DNA methyltransferase | |||
| 16400 | R | XcaYMrrP (100% identity) | Xca10090MrrP | |
| 16405 | type II toxin-antitoxin system RelE/ParE family | |||
| 22160 | RluA family pseudouridine synthase | |||
| 22165 | R | XcaYMrr2P (90% identity) | Xca10090Mrr2P | |
| 22170 | topoisomerase DNA-binding C4 zinc finger | |||