Xanthomonas campestris pv. campestris 10108 |
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Putative Xanthomonas campestris pv. campestris 10108 RM systems
Ref: Dubrow,Z.E. et al. Mol Plant Microbe Interact 35 (9), 791-802 (2022)
REBASE ref # 36208
Complete sequence: 5,114,786 bp
GenBank #: CP066933
REBASE acronym: Xca10108
Org_num: 65580
All begin JH304_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6010 | M48 family metallopeptidase | |||
| 6015 | R | XcaXY11ORF6160P (100% identity) | CAAGNNNNNCTTA | Xca10108ORF6030P |
| 6020 | S | S2.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | S.Xca10108ORF6030P |
| 6025 | damage-inducible protein D | |||
| 6030 | M | M.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | M.Xca10108ORF6030P |
| 6035 | restriction endonuclease subunit S | |||
| 16330 | 98 aa hypothetical protein | |||
| 16335 | R | XcaTJORFEP (89% identity) | Xca10108ORF16350P | |
| 16340 | S | S.XcaTJORFEP (74% identity) | S.Xca10108ORF16350P | |
| 16345 | virulence RhuM family protein | |||
| 16350 | M | M.XcaTJORFEP (100% identity) | M.Xca10108ORF16350P | |
| 16355 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10525 | AAA family ATPase | |||
| 10530 | M | M.XcaYORFEP (48% identity) | M.Xca10108ORF10530P | |
| 10535 | DNA topoisomerase III | |||
| 10585 | IS3-like element IS476 family transposase | |||
| 10590 | RM | XcaSB80ORF10635P (100% identity) | Xca10108ORF10590P | |
| 10595 | DEAD/DEAH box helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16350 | SAM-dependent DNA methyltransferase | |||
| 16355 | R | XcaYMrrP (100% identity) | Xca10108MrrP | |
| 16360 | type II toxin-antitoxin system RelE/ParE family | |||
| 22110 | RluA family pseudouridine synthase | |||
| 22115 | R | XcaYMrr2P (90% identity) | Xca10108Mrr2P | |
| 22120 | topoisomerase DNA-binding C4 zinc finger | |||