Escherichia coli E6474 |
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Putative Escherichia coli E6474 RM systems
Ref: Khine,N.O. et al. unpublished
REBASE ref # 36145
| Sequence length: | GenBank #: | |
| Chromosome: | 4,757,402 bp | CP116981 |
| plasmid pE6474.1: | 156,174 bp | CP116982 |
| plasmid pE6474.2: | 98,542 bp | CP116983 |
REBASE acronym: Eco6474
Org_num: 64898
All begin PO910_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2245 | endoribonuclease SymE | |||
| 2250 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco6474ORF2255P |
| 2255 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco6474ORF2255P |
| 2260 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco6474ORF2255P |
| 2265 | 322 aa hypothetical protein | |||
| 10700 | IS3-like element IS3 family transposase | |||
| 10705 | M | M.EcoMB57ORF11105P (100% identity) | TAAGNNNNNCTG | M.Eco6474ORF10705P |
| 10710 | S | S.Kpns229ORF25440P (100% identity) | TAAGNNNNNCTG | S.Eco6474ORF10705P |
| 10715 | R | Sen59ORF24615P (100% identity) | TAAGNNNNNCTG | Eco6474ORF10705P |
| 10720 | SprT family zinc-dependent metalloprotease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2045 | restriction endonuclease | |||
| 2050 | R | SflN101ORF11875P (100% identity) | Eco6474ORF2050P | |
| 2055 | HNH endonuclease | |||
| 4150 | PerC family transcriptional regulator | |||
| 4155 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco6474ORF4155P |
| 4160 | LexA family transcriptional regulator | |||
| 4195 | 95 aa hypothetical protein | |||
| 4200 | M | M.Sso63633ORF22290P (100% identity) | M.Eco6474ORF4200P | |
| 4205 | phage lysis protein EssD | |||
| 4330 | 257 aa hypothetical protein | |||
| 4335 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.Eco6474ORF4335P |
| 4340 | R | Sso8033ORF3755P (99% identity) | CCWGG | Eco6474ORF4335P |
| 4345 | tyrosine-type recombinase/integrase | |||
| 13075 | drug/metabolite exporter YedA | |||
| 13080 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco6474DcmP |
| 13085 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco6474DcmP |
| 13090 | HD domain-containing protein | |||
| 19555 | DNA-binding transcriptional regulator Fis | |||
| 19560 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco6474ORF19560P |
| 19565 | DUF2556 family protein | |||
| 20085 | ribulose-phosphate 3-epimerase | |||
| 20090 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco6474DamP |
| 20095 | cell division protein DamX | |||
| plasmid pE6474.1 | ||||
| 23615 | 103 aa hypothetical protein | |||
| 23620 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco6474ORF23620P |
| 23625 | 73 aa hypothetical protein | |||
| plasmid pE6474.2 | ||||
| 24390 | tellurite/colicin resistance protein | |||
| 24405 | M | M.EfeC13ORF24760P (100% identity) | M.Eco6474ORF24405P | |
| 24410 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2230 | DUF1127 domain-containing protein | |||
| 2235 | R | SflLIN8GmrSDP (42% identity) | Eco6474GmrSP | |
| 2240 | R | Ecos673GmrDP (100% identity) | Eco6474GmrDP | |
| 2245 | endoribonuclease SymE | |||