Escherichia coli XH2172 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli XH2172 RM systems
Ref: Li,X. unpublished
REBASE ref # 22399
| Sequence length: | GenBank #: | |
| Chromosome: | 4,784,059 bp | CP116900 |
| plasmid pXH2172-NDM: | 103,554 bp | CP116901 |
REBASE acronym: Eco2172
Org_num: 64754
All begin PH219_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12425 | IS1 family transposase | |||
| 12430 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco2172ORF12440P |
| 12435 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco2172ORF12440P |
| 12440 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco2172ORF12440P |
| 12445 | integrase core domain-containing protein | |||
| 20545 | transcription factor | |||
| 20550 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Eco2172ORF20550P |
| 20555 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.Eco2172ORF20550P |
| 20560 | DUF4433 domain-containing protein | |||
| 20565 | macro domain-containing protein | |||
| 20570 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Eco2172ORF20550P |
| 20575 | SprT family zinc-dependent metalloprotease | |||
| plasmid pXH2172-NDM | ||||
| 23270 | type II toxin-antitoxin system Phd/YefM family | |||
| 23275 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.Eco2172ORF23275P |
| 23280 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Eco2172ORF23275P |
| 23285 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | Eco2172ORF23275P |
| 23290 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8610 | cell division protein DamX | |||
| 8615 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco2172DamP |
| 8620 | ribulose-phosphate 3-epimerase | |||
| 9235 | DUF2556 family protein | |||
| 9240 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco2172ORF9240P |
| 9245 | DNA-binding transcriptional regulator Fis | |||
| 15840 | phosphohydrolase | |||
| 15845 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco2172DcmP |
| 15850 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco2172DcmP |
| 15855 | drug/metabolite exporter YedA | |||
| plasmid pXH2172-NDM | ||||
| 23375 | 103 aa hypothetical protein | |||
| 23380 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco2172ORF23380P |
| 23385 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19860 | isocitrate/isopropylmalate family dehydrogenase | |||
| 19865 | R | EmaE2C08McrCP (100% identity) | Eco2172McrCP | |
| 19870 | R | EcoteDMcrBP (100% identity) | Eco2172McrBP | |
| 19875 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21750 | replication endonuclease | |||
| 21755 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco2172ORF21755P |
| 21760 | TraR/DksA family transcriptional regulator | |||