Xylella fastidiosa subsp. fastidiosa IVIA5770 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Xylella fastidiosa subsp. fastidiosa IVIA5770 RM systems
Ref: Velasco-Amo,M.D.P. et al. Phytopathology (2022) In press
REBASE ref # 36083
Complete sequence: 2,542,564 bp
GenBank #: CP109892
REBASE acronym: Xfa5770
Org_num: 64693
All begin OK114_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1260 | DUF45 domain-containing protein | |||
| ??? | R | Xfav13ORF1230P (100% identity) | Xfa5770ORF1280P | |
| ??? | S | S.XfasSLORF1215P (100% identity) | S.Xfa5770ORF1280P | |
| ??? | M | M.XfaWM11ORF1245P (100% identity) | M.Xfa5770ORF1280P | |
| 1300 | 53 aa hypothetical protein | |||
| 11095 | 62 aa hypothetical protein | |||
| 11100 | R | Xfav13ORF11050P (100% identity) | GATCNNNNNNNTGC | Xfa5770ORF11110P |
| 11105 | S | S.Xfav13ORF11050P (100% identity) | GATCNNNNNNNTGC | S.Xfa5770ORF11110P |
| 11110 | M | M.Xfav13ORF11050P (100% identity) | GATCNNNNNNNTGC | M.Xfa5770ORF11110P |
| 11115 | HNH endonuclease family protein | |||
| 11115 | HNH endonuclease family protein | |||
| 11120 | R | Xfav13ORF11075P (100% identity) | GATCNNNNNNNTGC | Xfa5770ORF11135P |
| 11125 | S | S.Xfav13ORF11075P (100% identity) | GATCNNNNNNNTGC | S.Xfa5770ORF11135P |
| 11130 | 87 aa hypothetical protein | |||
| 11135 | M | M.Xfav13ORF11075P (100% identity) | GATCNNNNNNNTGC | M.Xfa5770ORF11135P |
| 11140 | LysE family translocator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5705 | 50 aa hypothetical protein | |||
| ??? | M | M.Xfav13ORF5610P (100% identity) | GCATGC | M.Xfa5770ORF5710P |
| 5720 | Ax21 family protein | |||
| 7155 | 60 aa hypothetical protein | |||
| 7160 | M | M.Xfav13ORF7095P (100% identity) | M.Xfa5770ORF7160P | |
| 7165 | 71 aa hypothetical protein | |||
| 7230 | low molecular weight phosphotyrosine protein | |||
| 7235 | M | M.Xfav13ORF7170P (100% identity) | M.Xfa5770ORF7235P | |
| 7240 | type II toxin-antitoxin system RelE/ParE family | |||
| 8640 | 41 aa hypothetical protein | |||
| 8645 | M | M.Xfav25ORF3130P (100% identity) | TTCGAA | M.Xfa5770ORF8645P |
| 8650 | R | Xfav13ORF8585P (100% identity) | TTCGAA | Xfa5770ORF8645P |
| 8655 | 69 aa hypothetical protein | |||
| 8850 | DNA primase | |||
| ??? | R | Xfav13ORF8800P (100% identity) | Xfa5770ORF8860P | |
| ??? | M | M.Xfav13ORF8800P (100% identity) | M.Xfa5770ORF8860P | |
| 8870 | tryptophan--tRNA ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4490 | 3-oxoacyl-ACP synthase III | |||
| 4495 | M | M.Xfav13ORF4440P (100% identity) | M.Xfa5770ORF4495P | |
| 4500 | R | Xfav13ORF4440P (100% identity) | Xfa5770ORF4495P | |
| 4505 | alpha/beta fold hydrolase | |||