Escherichia coli HH107 |
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Putative Escherichia coli HH107 RM systems
Ref: Charron,P. et al. unpublished
REBASE ref # 36049
| Sequence length: | GenBank #: | |
| Chromosome: | 4,795,218 bp | CP116405 |
| plasmid pHH107-1: | 109,717 bp | CP116406 |
| plasmid pHH107-2: | 74,423 bp | CP116407 |
REBASE acronym: EcoHM107
Org_num: 64569
All begin PL328_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pHH107-1 | ||||
| 23975 | DNA polymerase III subunit theta | |||
| 23980 | M | M.EcoB42ORF23770P (100% identity) | GACCNNNNNRTTC | M.EcoHM107ORF23980P |
| 23985 | S | S.EcoWW2ORF24545P (98% identity) | GACCNNNNNRTTC | S.EcoHM107ORF23980P |
| 23990 | R | EcoB42ORF23770P (100% identity) | GACCNNNNNRTTC | EcoHM107ORF23980P |
| 23995 | 158 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1885 | cell division protein DamX | |||
| 1890 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoHM107DamP |
| 1895 | ribulose-phosphate 3-epimerase | |||
| 8995 | phosphohydrolase | |||
| 9000 | M | M.EcosEC29DcmP (100% identity) | CCWGG | M.EcoHM107DcmP |
| 9005 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoHM107DcmP |
| 9010 | drug/metabolite exporter YedA | |||
| 11000 | DUF977 family protein | |||
| 11005 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoHM107ORF11005P | |
| 11010 | 139 aa hypothetical protein | |||
| 14020 | 175 aa hypothetical protein | |||
| 14025 | M | M.SglORF828P (100% identity) | M.EcoHM107ORF14025P | |
| 14030 | holin | |||
| 20145 | HNH endonuclease | |||
| 20150 | R | SflSTLE4ORF19250P (100% identity) | EcoHM107ORF20150P | |
| 20155 | McrC family protein | |||
| 21620 | phage holin, lambda family | |||
| 21625 | M | M.SflLIN17ORF17405P (100% identity) | M.EcoHM107ORF21625P | |
| 21630 | 67 aa hypothetical protein | |||
| 21655 | LexA family transcriptional regulator | |||
| 21660 | M | M.SflLIN17ORF20615P (100% identity) | GATC | M.EcoHM107ORF21660P |
| 21665 | PerC family transcriptional regulator | |||
| plasmid pHH107-2 | ||||
| 24240 | 104 aa hypothetical protein | |||
| 24245 | M | M.EcoNIH4ORF28685P (100% identity) | M.EcoHM107ORF24245P | |
| 24250 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20150 | HNH endonuclease | |||
| 20155 | R | SflSTLE4McrCP (100% identity) | EcoHM107McrCP | |
| 20160 | R | EcoEc40McrBP (100% identity) | EcoHM107McrBP | |
| 20165 | DUF4942 domain-containing protein | |||