Escherichia coli GN05505 |
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Putative Escherichia coli GN05505 RM systems
Ref: Bethke,J.H. et al. unpublished
REBASE ref # 35779
| Sequence length: | GenBank #: | |
| Chromosome: | 5,189,315 bp | CP095526 |
| plasmid p5505-2: | 72,021 bp | CP095528 |
REBASE acronym: Eco5505
Org_num: 63729
All begin MW395_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4930 | L,D-transpeptidase | |||
| 4935 | M | M.Sen64034II (100% identity) | AGCNNNNNCTTC | M.Eco5505ORF4935P |
| 4940 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.Eco5505ORF4935P |
| 4945 | restriction system-associated AAA family ATPase | |||
| 17575 | adenine/cytosine-specific restriction | |||
| 17580 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | Eco5505ORF17585P |
| 17585 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.Eco5505ORF17585P |
| 17590 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco5505ORF17585P |
| 17595 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5280 | phosphohydrolase | |||
| 5285 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.Eco5505DcmP |
| 5290 | V | V.Ecostr9DcmP (74% identity) | CCWGG | V.Eco5505DcmP |
| 5295 | drug/metabolite exporter YedA | |||
| 5820 | PerC family transcriptional regulator | |||
| 5825 | M | M.EcoSCU482ORF21135P (100% identity) | GATC | M.Eco5505ORF5825P |
| 5830 | RusA family crossover junction | |||
| 9010 | DUF6378 domain-containing protein | |||
| 9015 | M | M.EcoR51ORF13805P (97% identity) | M.Eco5505ORF9015P | |
| 9020 | 77 aa hypothetical protein | |||
| 10320 | NinE family protein | |||
| 10325 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco5505ORF10325P |
| 10330 | recombination protein NinB | |||
| 12785 | LexA family transcriptional regulator | |||
| 12790 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco5505ORF12790P |
| 12795 | PerC family transcriptional regulator | |||
| 22950 | cell division protein DamX | |||
| 22955 | M | M.Ecos69DamP (100% identity) | GATC | M.Eco5505DamP |
| 22960 | ribulose-phosphate 3-epimerase | |||
| 23480 | DUF2556 family protein | |||
| 23485 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.Eco5505ORF23485P |
| 23490 | DNA-binding transcriptional regulator Fis | |||
| plasmid p5505-2 | ||||
| 26505 | 73 aa hypothetical protein | |||
| 26510 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco5505ORF26510P |
| 26515 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17570 | GTPase | |||
| 17575 | R | Ssp28760MrrP (100% identity) | Eco5505MrrP | |
| 17580 | type I restriction-modification system | |||
| 17595 | endoribonuclease SymE | |||
| 17600 | R | SenHNK130McrBP (100% identity) | Eco5505McrBP | |
| 17605 | R | SenHNK130McrCP (100% identity) | Eco5505McrCP | |