Escherichia coli GN04171 |
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Putative Escherichia coli GN04171 RM systems
Ref: Bethke,J.H. et al. unpublished
REBASE ref # 35779
| Sequence length: | GenBank #: | |
| Chromosome: | 4,909,815 bp | CP095520 |
| plasmid p4171-1: | 42,897 bp | CP095521 |
| plasmid p4171-2: | 74,318 bp | CP095524 |
| plasmid p4171-3: | 67,887 bp | CP095522 |
REBASE acronym: Eco4171
Org_num: 63727
All begin MW404_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1550 | endoribonuclease SymE | |||
| 1555 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco4171ORF1565P |
| 1560 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco4171ORF1565P |
| 1565 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco4171ORF1565P |
| 1570 | restriction endonuclease | |||
| 3370 | ash family protein | |||
| 3375 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco4171ORF3380P |
| 3380 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco4171ORF3380P |
| 3385 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco4171ORF3380P |
| 3390 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6865 | 71 aa hypothetical protein | |||
| 6870 | M | M.KpnYN1ORFGP (89% identity) | M.Eco4171ORF6870P | |
| 6875 | helix-turn-helix domain-containing protein | |||
| 9165 | TrmB family transcriptional regulator | |||
| 9170 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco4171ORF9170P |
| 9185 | DUF3927 family protein | |||
| 12705 | drug/metabolite exporter YedA | |||
| 12710 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco4171DcmP |
| 12715 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco4171DcmP |
| 12720 | phosphohydrolase | |||
| 19710 | DNA-binding transcriptional regulator Fis | |||
| 19715 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco4171ORF19715P |
| 19720 | DUF2556 family protein | |||
| 20310 | ribulose-phosphate 3-epimerase | |||
| 20315 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4171DamP |
| 20320 | cell division protein DamX | |||
| plasmid p4171-1 | ||||
| 24210 | recombinase family protein | |||
| 24215 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco4171ORF24220P |
| 24220 | M | M.YpsR2ORFAP (99% identity) | CCWGG | M.Eco4171ORF24220P |
| 24225 | IS1 family transposase | |||
| plasmid p4171-2 | ||||
| 24905 | 103 aa hypothetical protein | |||
| 24910 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco4171ORF24910P |
| 24915 | 73 aa hypothetical protein | |||
| plasmid p4171-3 | ||||
| 24615 | 73 aa hypothetical protein | |||
| 24620 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco4171ORF24620P |
| 24625 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1215 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 1220 | R | EcosS9McrCP (100% identity) | Eco4171McrCP | |
| 1225 | R | EcosS3McrBP (100% identity) | Eco4171McrBP | |
| 1230 | glycosyltransferase | |||
| 1565 | type I restriction-modification system subunit | |||
| 1570 | R | Ecou021MrrP (100% identity) | Eco4171MrrP | |
| 1575 | BrnT family toxin | |||