Lactobacillus species IBH004 |
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Putative Lactobacillus species IBH004 RM systems
Ref: Brown,A.F. et al. unpublished
REBASE ref # 35685
Complete sequence: 1,965,960 bp
GenBank #: CP110217
REBASE acronym: LspH004
Org_num: 63401
All begin LDX54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8885 | single-stranded DNA-binding protein | |||
| ??? | M | M.LmuEF1ORFGP (51% identity) | M.LspH004ORF8880P | |
| 8870 | RusA family crossover junction | |||
| 8225 | 68 aa hypothetical protein | |||
| 8220 | M | M.LheH002ORF2705P (99% identity) | M.LspH004ORF8220P | |
| 8215 | S | S2.Lhe1ORF3040P (49% identity) | S1.LspH004ORF8220P | |
| 8210 | tyrosine-type recombinase/integrase | |||
| 8205 | S | S3.LheH002ORF2705P (94% identity) | S2.LspH004ORF8220P | |
| 8200 | S | S3.PacMT25ORFCP (33% identity) | S3.LspH004ORF8220P | |
| 8195 | R | LheH002ORF2705P (98% identity) | LspH004ORF8220P | |
| 8190 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1765 | ATP-binding cassette domain-containing protein | |||
| 1760 | R | OoeK193ORF6210P (53% identity) | LspH004ORF1755P | |
| 1755 | M | M.Lpa439ORF1818P (63% identity) | M.LspH004ORF1755P | |
| 1750 | 312 aa hypothetical protein | |||
| 8905 | 41 aa hypothetical protein | |||
| 8900 | M | M.Lme184ORF2670P (98% identity) | M.LspH004ORF8900P | |
| 8895 | 150 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1340 | exodeoxyribonuclease III | |||
| 1335 | R | Lme184ORF535P (98% identity) | LspH004ORF1335P | |
| 1330 | 83 aa hypothetical protein | |||
| 8195 | type I restriction endonuclease subunit R | |||
| 8190 | R | Lme184MrrP (97% identity) | LspH004MrrP | |
| 8185 | 103 aa hypothetical protein | |||