Lacticaseibacillus paracasei subsp. tolerans FX-6 |
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Putative Lacticaseibacillus paracasei subsp. tolerans FX-6 RM systems
Ref: Miao,J. et al. Food Control 65 (1), 63-72 (2016)
REBASE ref # 35558
Complete sequence: 3,214,847 bp
GenBank #: CP109944
REBASE acronym: LpaFX6
Org_num: 62981
All begin OH134_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11180 | DUF262 domain-containing HNH endonuclease family | |||
| 11185 | S | S4.LpaFX626ORF11220P (100% identity) | S4.LpaFX6ORF11205P | |
| 11190 | site-specific integrase | |||
| 11195 | S | S3.LpaFX626ORF11220P (100% identity) | S3.LpaFX6ORF11205P | |
| ??? | S | S2.LpaFX626ORF11220P (100% identity) | S2.LpaFX6ORF11205P | |
| 11200 | S | S1.LpaFX626ORF11220P (100% identity) | S1.LpaFX6ORF11205P | |
| 11205 | M | M.LpaFX626ORF11220P (100% identity) | M.LpaFX6ORF11205P | |
| 11210 | R | LpaFX626ORF11220P (100% identity) | LpaFX6ORF11205P | |
| 11215 | 188 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4780 | endonuclease | |||
| 4785 | M | M.LpaFX6ORF5080P (100% identity) | M.LpaFX6ORF4785P | |
| 4790 | SAM-dependent methyltransferase | |||
| 4825 | 89 aa hypothetical protein | |||
| 4830 | M | M.LpaFX6ORF5125P (100% identity) | M.LpaFX6ORF4830P | |
| 4835 | YopX family protein | |||
| 5075 | endonuclease | |||
| 5080 | M | M.LpaFX6ORF4785P (100% identity) | M.LpaFX6ORF5080P | |
| 5085 | SAM-dependent methyltransferase | |||
| 5120 | 89 aa hypothetical protein | |||
| 5125 | M | M.LpaFX6ORF4830P (100% identity) | M.LpaFX6ORF5125P | |
| 5130 | YopX family protein | |||
| 7340 | RNA-binding transcriptional accessory protein | |||
| 7345 | M | M.LpaFX626ORF7365P (100% identity) | M.LpaFX6ORF7345P | |
| 7350 | 285 aa hypothetical protein | |||
| 8785 | Fic family protein | |||
| 8790 | RM | LpaFX626ORF8810P (100% identity) | LpaFX6ORF8790P | |
| 8795 | 60 aa hypothetical protein | |||
| 10585 | ISL3 family transposase | |||
| 10590 | R | LpaFX626ORF10610P (100% identity) | LpaFX6ORF10595P | |
| 10595 | M | M.LpaFX626ORF10610P (100% identity) | M.LpaFX6ORF10595P | |
| 10600 | 109 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11175 | 268 aa hypothetical protein | |||
| 11180 | R | LpaFX626GmrSDP (100% identity) | LpaFX6GmrSDP | |
| 11185 | restriction endonuclease subunit S | |||