Escherichia coli DFL.5 |
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Putative Escherichia coli DFL.5 RM systems
Ref: Sun,Y. unpublished
REBASE ref # 32922
| Sequence length: | GenBank #: | |
| Chromosome: | 5,077,794 bp | CP104843 |
| plasmid unnamed1: | 112,215 bp | CP104844 |
REBASE acronym: EcoDFL5
Org_num: 62240
All begin N7217_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10160 | IS3 family transposase | |||
| 10165 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoDFL5ORF10165P |
| 10170 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoDFL5ORF10165P |
| 10175 | YecA family protein | |||
| 10180 | cold shock domain-containing protein | |||
| 10185 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | EcoDFL5ORF10165P |
| 10190 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1945 | cell division protein DamX | |||
| 1950 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoDFL5DamP |
| 1955 | ribulose-phosphate 3-epimerase | |||
| 2475 | DUF2556 family protein | |||
| 2480 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.EcoDFL5ORF2480P |
| 2485 | DNA-binding transcriptional regulator Fis | |||
| 6755 | DUF1382 family protein | |||
| 6760 | M | M.SspPIBORF6330P (100% identity) | GATC | M.EcoDFL5ORF6760P |
| 6765 | PerC family transcriptional regulator | |||
| 9900 | phosphohydrolase | |||
| 9905 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.EcoDFL5DcmP |
| 9910 | V | V.Ecos142DcmP (100% identity) | V.EcoDFL5DcmP | |
| 9915 | drug/metabolite exporter YedA | |||
| 13610 | DUF3927 family protein | |||
| 13625 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoDFL5ORF13625P |
| 13630 | TrmB family transcriptional regulator | |||
| 20695 | HNH endonuclease | |||
| 20700 | R | SflN116ORF19475P (100% identity) | EcoDFL5ORF20700P | |
| 20705 | 100 aa hypothetical protein | |||
| 21710 | integrase | |||
| 21715 | R | SflFF24DptFP (100% identity) | EcoDFL5DptFP | |
| 21720 | DNA phosphorothioation-dependent restriction | |||
| 21715 | DNA phosphorothioation-dependent restriction | |||
| 21720 | R | SflFF24DptGP (100% identity) | EcoDFL5DptGP | |
| 21725 | DNA phosphorothioation-dependent restriction | |||
| 21720 | DNA phosphorothioation-dependent restriction | |||
| 21725 | R | EcosEC5DptHP (100% identity) | EcoDFL5DptHP | |
| 21730 | accessory gene regulator B family protein | |||
| 21740 | DGQHR domain-containing protein | |||
| 21745 | M | M.SflFF24DndEP (100% identity) | M.EcoDFL5DndEP | |
| 21750 | DNA sulfur modification protein DndD | |||
| 21745 | DNA sulfur modification protein DndE | |||
| 21750 | M | M.EcoECJ9DndDP (100% identity) | M.EcoDFL5DndDP | |
| 21755 | DNA phosphorothioation system sulfurtransferase | |||
| 21750 | DNA sulfur modification protein DndD | |||
| 21755 | M | M.SflFF24DndCP (100% identity) | M.EcoDFL5DndCP | |
| 21760 | DNA sulfur modification protein DndB | |||
| 21755 | DNA phosphorothioation system sulfurtransferase | |||
| 21760 | M | M.SflFF24DndBP (100% identity) | M.EcoDFL5DndBP | |
| 21765 | osmoprotectant transport activator ProQ | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20705 | 100 aa hypothetical protein | |||
| 20710 | R | SflN116ORF19490P (100% identity) | GAACC | EcoDFL5ORF20715P |
| 20715 | M | M.SflN116ORF19490P (100% identity) | GAACC | M.EcoDFL5ORF20715P |
| 20720 | SNF2-related protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid unnamed1 | ||||
| 25000 | 269 aa hypothetical protein | |||
| 25005 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoDFL5ORF25005P |
| 25010 | 76 aa hypothetical protein | |||