Escherichia coli E4 |
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Putative Escherichia coli E4 RM systems
Ref: Feng,A. et al. unpublished
REBASE ref # 35294
| Sequence length: | GenBank #: | |
| Chromosome: | 4,922,292 bp | CP104516 |
| plasmid p2: | 119,377 bp | CP104518 |
REBASE acronym: EcoE4
Org_num: 61959
All begin N5O79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12065 | adenine/cytosine-specific restriction | |||
| 12070 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | EcoE4ORF12075P |
| 12075 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.EcoE4ORF12075P |
| 12080 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.EcoE4ORF12075P |
| 12085 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 725 | phosphohydrolase | |||
| 730 | M | M.Ecos67DcmP (100% identity) | CCWGG | M.EcoE4DcmP |
| 735 | V | V.Ecos195DcmP (100% identity) | V.EcoE4DcmP | |
| 740 | drug/metabolite exporter YedA | |||
| 5350 | LexA family transcriptional regulator | |||
| 5355 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoE4ORF5355P |
| 5360 | PerC family transcriptional regulator | |||
| 9880 | 158 aa hypothetical protein | |||
| 9885 | R | Sso8033ORF3755P (100% identity) | CCWGG | EcoE4ORF9890P |
| 9890 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoE4ORF9890P |
| 9895 | 257 aa hypothetical protein | |||
| 10080 | transposase | |||
| 10085 | RM | SflLIN17ORF3140P (100% identity) | EcoE4ORF10085P | |
| 10090 | DEAD/DEAH box helicase | |||
| 14085 | phage lysis protein EssD | |||
| 14090 | M | M.EcoSTEFF1ORF20090P (100% identity) | M.EcoE4ORF14090P | |
| 14095 | 67 aa hypothetical protein | |||
| 14125 | LexA family transcriptional regulator | |||
| 14130 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoE4ORF14130P |
| 14135 | PerC family transcriptional regulator | |||
| 17945 | cell division protein DamX | |||
| 17950 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoE4DamP |
| 17955 | ribulose-phosphate 3-epimerase | |||
| 18570 | DUF2556 family protein | |||
| 18575 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoE4ORF18575P |
| 18580 | DNA-binding transcriptional regulator Fis | |||
| plasmid p2 | ||||
| 25320 | 103 aa hypothetical protein | |||
| 25325 | M | M.SspPIBORF23080P (100% identity) | M.EcoE4ORF25325P | |
| 25330 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5150 | isocitrate/isopropylmalate family dehydrogenase | |||
| 5155 | R | EcoRS76GmrSDP (100% identity) | EcoE4GmrSDP | |
| 5160 | recombinase family protein | |||
| 12060 | GTPase | |||
| 12065 | R | Ssp28760MrrP (100% identity) | EcoE4MrrP | |
| 12070 | type I restriction-modification system | |||