Escherichia coli HL15 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli HL15 RM systems
Ref: Zhang,S. et al. unpublished
REBASE ref # 35187
| Sequence length: | GenBank #: | |
| Chromosome: | 4,724,779 bp | CP079770 |
| plasmid pHL15EC-1: | 266,941 bp | CP079769 |
| plasmid pHL15EC-2: | 41,027 bp | CP079771 |
REBASE acronym: EcoHL15
Org_num: 61546
All begin KYX58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9835 | GTPase family protein | |||
| 9840 | M | M.EcoSF10ORF10475P (100% identity) | M.EcoHL15ORF9840P | |
| 9845 | S | S1.EcoSF10ORF10475P (100% identity) | S1.EcoHL15ORF9840P | |
| 9850 | R | EcoSF10ORF10475P (100% identity) | EcoHL15ORF9840P | |
| 9855 | IS1 family transposase | |||
| 15340 | restriction endonuclease | |||
| 15345 | M | M.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | M.EcoHL15ORF15345P |
| 15350 | S | S.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | S.EcoHL15ORF15345P |
| 15355 | R | SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | EcoHL15ORF15345P |
| 15360 | endoribonuclease SymE | |||
| 23945 | IS1 family transposase | |||
| 23950 | S | S.EcoSF10ORF24580P (100% identity) | S.EcoHL15ORF23950P | |
| 23955 | R | EcoSF10ORF24580P (100% identity) | EcoHL15ORF23950P | |
| 23960 | HigA family addiction module antidote protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4480 | phosphohydrolase | |||
| 4485 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoHL15DcmP |
| 4490 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoHL15DcmP |
| 4495 | drug/metabolite exporter YedA | |||
| 4650 | 72 aa hypothetical protein | |||
| 4655 | M | M.EcoSF10ORF5290P (100% identity) | M.EcoHL15ORF4655P | |
| 4660 | DUF1317 domain-containing protein | |||
| 20070 | cell division protein DamX | |||
| 20075 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoHL15DamP |
| 20080 | ribulose-phosphate 3-epimerase | |||
| 24580 | DUF1382 family protein | |||
| 24585 | M | M.EcoTCM3e1ORF6790P (100% identity) | M.EcoHL15ORF24585P | |
| 24590 | PerC family transcriptional regulator | |||
| plasmid pHL15EC-1 | ||||
| 240 | 284 aa hypothetical protein | |||
| 245 | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoHL15ORF245P |
| 250 | DNA-binding protein | |||
| 360 | 202 aa hypothetical protein | |||
| 365 | M | M.YpsF1ORFBP (100% identity) | M.EcoHL15ORF365P | |
| 370 | 48 aa hypothetical protein | |||
| 1035 | thermonuclease family protein | |||
| 1040 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoHL15ORF1040P |
| 1045 | 55 aa hypothetical protein | |||
| plasmid pHL15EC-2 | ||||
| 24855 | DUF1382 family protein | |||
| 24860 | M | M.EcoTCM3e1ORF6790P (100% identity) | M.EcoHL15ORF24860P | |
| 24865 | PerC family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9965 | IS5 family transposase | |||
| 9970 | R | EcoSF10McrCP (100% identity) | EcoHL15McrCP | |
| 9975 | restriction endonuclease | |||
| 15335 | BrnT family toxin | |||
| 15340 | R | SflSTLE3MrrP (100% identity) | EcoHL15MrrP | |
| 15345 | type I restriction-modification system subunit | |||