Escherichia coli 4973 |
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Putative Escherichia coli 4973 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 5,165,674 bp | CP103468 |
| plasmid pMB9698_1: | 96,268 bp | CP103469 |
| plasmid pMB9698_2: | 85,055 bp | CP103470 |
| plasmid pMB9698_3: | 47,715 bp | CP103471 |
REBASE acronym: Eco4973
Org_num: 61530
All begin M5S50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10115 | IS3 family transposase | |||
| 10120 | M | M.Ecos142ORF9685P (99% identity) | GATGNNNNNNTAC | M.Eco4973ORF10120P |
| 10125 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.Eco4973ORF10120P |
| 10130 | YecA family protein | |||
| 10135 | cold shock domain-containing protein | |||
| 10140 | R | Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | Eco4973ORF10120P |
| 10145 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1815 | cell division protein DamX | |||
| 1820 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4973DamP |
| 1825 | ribulose-phosphate 3-epimerase | |||
| 2345 | DUF2556 family protein | |||
| 2350 | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.Eco4973ORF2350P |
| 2355 | DNA-binding transcriptional regulator Fis | |||
| 9855 | phosphohydrolase | |||
| 9860 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.Eco4973DcmP |
| 9865 | V | V.Ecos142DcmP (100% identity) | V.Eco4973DcmP | |
| 9870 | drug/metabolite exporter YedA | |||
| 13600 | DUF3927 family protein | |||
| 13615 | M | M.SsoL4094ORF17545P (100% identity) | A | M.Eco4973ORF13615P |
| 13620 | TrmB family transcriptional regulator | |||
| 16035 | replication endonuclease | |||
| 16040 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco4973ORF16040P |
| 16045 | TraR/DksA family transcriptional regulator | |||
| 19265 | phage holin, lambda family | |||
| 19270 | M | M.EcoNIH1ORF1505P (100% identity) | M.Eco4973ORF19270P | |
| 19275 | 67 aa hypothetical protein | |||
| 19305 | LexA family transcriptional regulator | |||
| 19310 | M | M.EcoNIH1ORF1465P (100% identity) | GATC | M.Eco4973ORF19310P |
| 19315 | PerC family transcriptional regulator | |||
| 21175 | HNH endonuclease | |||
| 21180 | R | SflN116ORF19475P (100% identity) | Eco4973ORF21180P | |
| 21185 | 100 aa hypothetical protein | |||
| 22890 | LexA family transcriptional regulator | |||
| 22895 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Eco4973ORF22895P |
| 22900 | PerC family transcriptional regulator | |||
| plasmid pMB9698_1 | ||||
| 25585 | IS3 family transposase | |||
| 25590 | M | M.Eco9006ORF5043P (79% identity) | M.Eco4973ORF25590P | |
| 25595 | recombination-associated protein RdgC | |||
| plasmid pMB9698_2 | ||||
| 25725 | 101 aa hypothetical protein | |||
| 25730 | M | M.SenBR027ORFEP (100% identity) | SAY | M.Eco4973ORF25730P |
| 25735 | 73 aa hypothetical protein | |||
| plasmid pMB9698_3 | ||||
| 26370 | 92 aa hypothetical protein | |||
| 26380 | M | M.EcoR39ORF19830P (100% identity) | M.Eco4973ORF26380P | |
| 26385 | 89 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21185 | 100 aa hypothetical protein | |||
| 21190 | R | SflN116ORF19490P (100% identity) | Eco4973ORF21195P | |
| 21195 | M | M.EcoC0350ORF21250P (100% identity) | M.Eco4973ORF21195P | |
| 21200 | IS1 family transposase | |||