Escherichia coli O25b:H4-ST131 5506 |
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Putative Escherichia coli O25b:H4-ST131 5506 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 4,999,416 bp | CP103508 |
| plasmid pMB9366_1: | 111,292 bp | CP103509 |
REBASE acronym: Eco5506
Org_num: 61562
All begin M5T03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18660 | type IV toxin-antitoxin system AbiEi family | |||
| 18665 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco5506ORF18670P |
| 18670 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco5506ORF18670P |
| 18675 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco5506ORF18670P |
| 18680 | ash family protein | |||
| 20485 | restriction endonuclease | |||
| 20490 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco5506ORF20490P |
| 20495 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco5506ORF20490P |
| 20500 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco5506ORF20490P |
| 20505 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco5506DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2320 | DUF2556 family protein | |||
| 2325 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco5506ORF2325P |
| 2330 | DNA-binding transcriptional regulator Fis | |||
| 9310 | phosphohydrolase | |||
| 9315 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco5506DcmP |
| 9320 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco5506DcmP |
| 9325 | drug/metabolite exporter YedA | |||
| 12865 | DUF3927 family protein | |||
| 12880 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco5506ORF12880P |
| 12885 | TrmB family transcriptional regulator | |||
| 15140 | helix-turn-helix domain-containing protein | |||
| 15145 | M | M.KpnYN1ORFGP (89% identity) | M.Eco5506ORF15145P | |
| 15150 | 71 aa hypothetical protein | |||
| plasmid pMB9366_1 | ||||
| 25105 | 73 aa hypothetical protein | |||
| 25110 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco5506ORF25110P |
| 25115 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20480 | BrnT family toxin | |||
| 20485 | R | Ecou021MrrP (100% identity) | Eco5506MrrP | |
| 20490 | type I restriction-modification system subunit | |||
| 20825 | glycosyltransferase | |||
| 20830 | R | EcosS3McrBP (100% identity) | Eco5506McrBP | |
| 20835 | R | EcosS9McrCP (100% identity) | Eco5506McrCP | |
| 20840 | Alw26I/Eco31I/Esp3I family type II restriction | |||