Escherichia coli 2900 |
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Putative Escherichia coli 2900 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 5,195,434 bp | CP103633 |
| plasmid pMB6066_1: | 151,676 bp | CP103634 |
REBASE acronym: Eco2900
Org_num: 61514
All begin M5S90_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5920 | IS3 family transposase | |||
| 5925 | R | SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | Eco2900ORF5940P |
| 5930 | S | S2.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | S.Eco2900ORF5940P |
| 5935 | AAA family ATPase | |||
| 5940 | M | M.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | M.Eco2900ORF5940P |
| 5945 | transposase domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1850 | cell division protein DamX | |||
| 1855 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco2900DamP |
| 1860 | ribulose-phosphate 3-epimerase | |||
| 2380 | DUF2556 family protein | |||
| 2385 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco2900ORF2385P |
| 2390 | DNA-binding transcriptional regulator Fis | |||
| 4040 | osmoprotectant transport activator ProQ | |||
| 4045 | M | M.SflFF24DndBP (100% identity) | M.Eco2900DndBP | |
| 4050 | DNA phosphorothioation system sulfurtransferase | |||
| 4045 | DNA sulfur modification protein DndB | |||
| 4050 | M | M.SflFF24DndCP (100% identity) | M.Eco2900DndCP | |
| 4055 | DNA sulfur modification protein DndD | |||
| 4050 | DNA phosphorothioation system sulfurtransferase | |||
| 4055 | M | M.SflFF24DndDP (100% identity) | M.Eco2900DndDP | |
| 4060 | DNA sulfur modification protein DndE | |||
| 4055 | DNA sulfur modification protein DndD | |||
| 4060 | M | M.SflFF24DndEP (100% identity) | M.Eco2900DndEP | |
| 4065 | DGQHR domain-containing protein | |||
| 4075 | accessory gene regulator B family protein | |||
| 4080 | R | EcosEC5DptHP (100% identity) | Eco2900DptHP | |
| 4085 | DNA phosphorothioation-dependent restriction | |||
| 4080 | DNA phosphorothioation-dependent restriction | |||
| 4085 | R | SflFF24DptGP (100% identity) | Eco2900DptGP | |
| 4090 | DNA phosphorothioation-dependent restriction | |||
| 4085 | DNA phosphorothioation-dependent restriction | |||
| 4090 | R | SflFF24DptFP (100% identity) | Eco2900DptFP | |
| 4095 | integrase | |||
| 8820 | replication endonuclease | |||
| 8825 | M | M.Sbo812ORFEP (100% identity) | M.Eco2900ORF8825P | |
| 8830 | 330 aa hypothetical protein | |||
| 8835 | R | EcosEC21ORF7960P (100% identity) | Eco2900ORF8825P | |
| 8840 | phage portal protein | |||
| 9775 | HD domain-containing protein | |||
| 9780 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco2900DcmP |
| 9785 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Eco2900DcmP |
| 9790 | drug/metabolite exporter YedA | |||
| 16070 | phage portal protein | |||
| 16075 | R | EcosEC21ORF7960P (100% identity) | Eco2900ORF16085P | |
| 16080 | 330 aa hypothetical protein | |||
| 16085 | M | M.Sbo812ORFEP (100% identity) | M.Eco2900ORF16085P | |
| 16090 | replication endonuclease | |||
| plasmid pMB6066_1 | ||||
| 25000 | 103 aa hypothetical protein | |||
| 25005 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco2900ORF25005P | |
| 25010 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20990 | GTPase | |||
| 20995 | R | EcosS1MrrP (100% identity) | Eco2900MrrP | |
| 21000 | type I restriction-modification system | |||