Escherichia coli 4314 |
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Putative Escherichia coli 4314 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 4,891,751 bp | CP103609 |
| plasmid pMB7206_1: | 98,694 bp | CP103610 |
REBASE acronym: Eco4314
Org_num: 61526
All begin M5S83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3930 | endoribonuclease SymE | |||
| 3935 | R | EcosEC9ORF12765P (100% identity) | GACNNNNNTRRG | Eco4314ORF3945P |
| 3940 | S | S.EcosEC9ORF12765P (100% identity) | GACNNNNNTRRG | S.Eco4314ORF3945P |
| 3945 | M | M.Esp9308ORFIP (100% identity) | GACNNNNNTRRG | M.Eco4314ORF3945P |
| 3950 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3520 | cell surface composition regulator GlgS | |||
| 3525 | R | SflN107ORF20240P (100% identity) | Eco4314ORF3525P | |
| 3530 | conjugal transfer protein TraG N-terminal | |||
| 3745 | 332 aa hypothetical protein | |||
| 3750 | R | EcosEC9ORF12570P (100% identity) | Eco4314ORF3750P | |
| 3755 | HNH endonuclease | |||
| 5960 | 59 aa hypothetical protein | |||
| 5965 | M | M.Ecos67ORF8885P (100% identity) | M.Eco4314ORF5965P | |
| 5970 | R | Ecos67ORF8885P (100% identity) | Eco4314ORF5965P | |
| 5975 | HEPN domain-containing protein | |||
| 8810 | TraR/DksA family transcriptional regulator | |||
| 8815 | M | M.EcoW113ORFIP (100% identity) | GATC | M.Eco4314ORF8815P |
| 8820 | replication endonuclease | |||
| 14300 | drug/metabolite exporter YedA | |||
| 14305 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco4314DcmP |
| 14310 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco4314DcmP |
| 14315 | phosphohydrolase | |||
| 18005 | replication endonuclease | |||
| 18010 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco4314ORF18010P |
| 18015 | TraR/DksA family transcriptional regulator | |||
| 21410 | DNA-binding transcriptional regulator Fis | |||
| 21415 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco4314ORF21415P |
| 21420 | DUF2556 family protein | |||
| 22010 | ribulose-phosphate 3-epimerase | |||
| 22015 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4314DamP |
| 22020 | cell division protein DamX | |||
| plasmid pMB7206_1 | ||||
| 23640 | 311 aa hypothetical protein | |||
| 23645 | M | M.EcoS51ORF25925P (98% identity) | M.Eco4314ORF23645P | |
| 23650 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3945 | type I restriction-modification system subunit | |||
| 3950 | R | EcosEC9MrrP (100% identity) | Eco4314MrrP | |
| 3955 | BrnT family toxin | |||