Escherichia coli PD23 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli PD23 RM systems
Ref: Lopez-Dorta,Y. et al. unpublished
REBASE ref # 35036
Complete sequence: 5,175,971 bp
GenBank #: CP074052
REBASE acronym: EcoPD23
Org_num: 60939
All begin KFU85_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10030 | IS3 family transposase | |||
| 10035 | M | M.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | M.EcoPD23ORF10035P |
| 10040 | S | S.Ecos142ORF9685P (100% identity) | GATGNNNNNNTAC | S.EcoPD23ORF10035P |
| 10045 | YecA family protein | |||
| 10050 | cold shock domain-containing protein | |||
| 10055 | R | Ecoppa2ORF22455P (100% identity) | GATGNNNNNNTAC | EcoPD23ORF10035P |
| 10060 | M48 family metallopeptidase | |||
| 15185 | transcription factor | |||
| 15190 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoPD23ORF15190P |
| 15195 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.EcoPD23ORF15190P |
| 15200 | DUF4433 domain-containing protein | |||
| 15205 | macro domain-containing protein | |||
| 15210 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoPD23ORF15190P |
| 15215 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1780 | cell division protein DamX | |||
| 1785 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPD23DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2310 | DUF2556 family protein | |||
| 2315 | M | M.Ecoppa2ORF6235P (100% identity) | ATGCAT | M.EcoPD23ORF2315P |
| 2320 | DNA-binding transcriptional regulator Fis | |||
| 9775 | phosphohydrolase | |||
| 9780 | M | M.Ecoppa2DcmP (100% identity) | CCWGG | M.EcoPD23DcmP |
| 9785 | V | V.Ecoppa2DcmP (100% identity) | V.EcoPD23DcmP | |
| 9790 | drug/metabolite exporter YedA | |||
| 18975 | 253 aa hypothetical protein | |||
| 18980 | R | Ecos67ORF8885P (100% identity) | EcoPD23ORF18985P | |
| 18985 | M | M.Ecos67ORF8885P (100% identity) | M.EcoPD23ORF18985P | |
| 18990 | 59 aa hypothetical protein | |||
| 21195 | RM | EcoZ30ORF19095P (100% identity) | EcoPD23ORF21195P | |
| 21200 | DEAD/DEAH box helicase | |||
| 21240 | HNH endonuclease | |||
| 21245 | R | Ecoppa2ORF12035P (100% identity) | EcoPD23ORF21245P | |
| 21250 | 332 aa hypothetical protein | |||
| 21425 | osmoprotectant transport activator ProQ | |||
| 21430 | M | M.SflFF24DndBP (100% identity) | M.EcoPD23DndBP | |
| 21435 | DNA phosphorothioation system sulfurtransferase | |||
| 21430 | DNA sulfur modification protein DndB | |||
| 21435 | M | M.SflFF24DndCP (100% identity) | M.EcoPD23DndCP | |
| 21440 | DNA sulfur modification protein DndD | |||
| 21435 | DNA phosphorothioation system sulfurtransferase | |||
| 21440 | M | M.SflFF24DndDP (99% identity) | M.EcoPD23DndDP | |
| 21445 | DNA sulfur modification protein DndE | |||
| 21440 | DNA sulfur modification protein DndD | |||
| 21445 | M | M.SflFF24DndEP (100% identity) | M.EcoPD23DndEP | |
| 21450 | DGQHR domain-containing protein | |||
| 21460 | accessory gene regulator B family protein | |||
| 21465 | R | EcotcmA3DptHP (100% identity) | EcoPD23DptHP | |
| 21470 | DNA phosphorothioation-dependent restriction | |||
| 21465 | DNA phosphorothioation-dependent restriction | |||
| 21470 | R | SflFF24DptGP (100% identity) | EcoPD23DptGP | |
| 21475 | DNA phosphorothioation-dependent restriction | |||
| 21470 | DNA phosphorothioation-dependent restriction | |||
| 21475 | R | SflFF24DptFP (100% identity) | EcoPD23DptFP | |
| 21480 | porin family protein | |||