Escherichia coli MB98 |
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Putative Escherichia coli MB98 RM systems
Ref: Lopez-Dorta,Y. et al. unpublished
REBASE ref # 35036
Complete sequence: 4,858,832 bp
GenBank #: CP073926
REBASE acronym: EcoMB98
Org_num: 60935
All begin KFU77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4240 | 184 aa hypothetical protein | |||
| 4245 | R | Ecos53ORF20340P (99% identity) | ACYNNNNNNGTTC | EcoMB98ORF4255P |
| 4250 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.EcoMB98ORF4255P |
| 4255 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.EcoMB98ORF4255P |
| 4260 | type II toxin-antitoxin system RelB/DinJ family | |||
| 6035 | IS1 family transposase | |||
| 6040 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoMB98ORF6050P |
| 6045 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoMB98ORF6050P |
| 6050 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoMB98ORF6050P |
| 6055 | integrase core domain-containing protein | |||
| 20740 | AAA family ATPase | |||
| 20745 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoMB98ORF20750P |
| 20750 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoMB98ORF20750P |
| 20755 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoMB98ORF20750P |
| 20760 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1935 | cell division protein DamX | |||
| 1940 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoMB98DamP |
| 1945 | ribulose-phosphate 3-epimerase | |||
| 2560 | DUF2556 family protein | |||
| 2565 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoMB98ORF2565P |
| 2570 | DNA-binding transcriptional regulator Fis | |||
| 9565 | phosphohydrolase | |||
| 9570 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoMB98DcmP |
| 9575 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoMB98DcmP |
| 9580 | drug/metabolite exporter YedA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13495 | isocitrate dehydrogenase | |||
| 13500 | R | EcosEC27McrCP (100% identity) | EcoMB98McrCP | |
| 13505 | R | EcoteDMcrBP (100% identity) | EcoMB98McrBP | |
| 13510 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15050 | replication endonuclease | |||
| 15055 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoMB98ORF15055P |
| 15060 | TraR/DksA family transcriptional regulator | |||