Escherichia coli YL3 |
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Putative Escherichia coli YL3 RM systems
Ref: Chen,D. unpublished
REBASE ref # 27761
| Sequence length: | GenBank #: | |
| Chromosome: | 5,111,379 bp | CP090196 |
| plasmid p1: | 97,598 bp | CP090197 |
REBASE acronym: EcoYL3
Org_num: 60955
All begin LXN07_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20960 | adenine/cytosine-specific restriction | |||
| 20965 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoYL3ORF20970P |
| 20970 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.EcoYL3ORF20970P |
| 20975 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoYL3ORF20970P |
| 20980 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1840 | cell division protein DamX | |||
| 1845 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoYL3DamP |
| 1850 | ribulose-phosphate 3-epimerase | |||
| 2370 | DUF2556 family protein | |||
| 2375 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoYL3ORF2375P |
| 2380 | DNA-binding transcriptional regulator Fis | |||
| 9660 | phosphohydrolase | |||
| 9665 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoYL3DcmP |
| 9670 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoYL3DcmP |
| 9675 | drug/metabolite exporter YedA | |||
| plasmid p1 | ||||
| 24700 | 97 aa hypothetical protein | |||
| 24705 | M | M.Ssop356ORFAP (100% identity) | M.EcoYL3ORF24705P | |
| 24710 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20955 | GTPase | |||
| 20960 | R | EcosS1MrrP (100% identity) | EcoYL3MrrP | |
| 20965 | type I restriction-modification system | |||