Escherichia coli LP5-1 |
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Putative Escherichia coli LP5-1 RM systems
Ref: Lu,X. et al. unpublished
REBASE ref # 27674
| Sequence length: | GenBank #: | |
| Chromosome: | 4,578,540 bp | CP101866 |
| plasmid pLP5-1-106kb: | 106,681 bp | CP101867 |
REBASE acronym: EcoLP51
Org_num: 60720
All begin NPX81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3305 | IS1-like element IS1A family transposase | |||
| 3310 | R | Eco16C11ORF28060P (98% identity) | CAAYNNNNNNCTGG | EcoLP51ORF3320P |
| 3315 | S | S.EcoNT1N34ORFDP (72% identity) | CAAYNNNNNNCTGG | S.EcoLP51ORF3320P |
| 3320 | M | M.Ecos67ORF22160P (98% identity) | CAAYNNNNNNCTGG | M.EcoLP51ORF3320P |
| 3325 | GTPase family protein | |||
| plasmid pLP5-1-106kb | ||||
| 22370 | type II toxin-antitoxin system Phd/YefM family | |||
| 22375 | M | M.SenceORFJP (99% identity) | CAAYNNNNNNCTGG | M.EcoLP51ORF22375P |
| 22380 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoLP51ORF22375P |
| 22385 | R | SenceORFJP (100% identity) | CAAYNNNNNNCTGG | EcoLP51ORF22375P |
| 22390 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1680 | cell division protein DamX | |||
| 1685 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLP51DamP |
| 1690 | ribulose-phosphate 3-epimerase | |||
| 2275 | DUF2556 family protein | |||
| 2280 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLP51ORF2280P |
| 2285 | DNA-binding transcriptional regulator Fis | |||
| 6030 | 58 aa hypothetical protein | |||
| 6035 | M | M.EcoPT62ORF6030P (100% identity) | M.EcoLP51ORF6035P | |
| 6040 | PerC family transcriptional regulator | |||
| 6085 | 67 aa hypothetical protein | |||
| 6090 | M | M.EcoPT62ORF6085P (100% identity) | M.EcoLP51ORF6090P | |
| 6095 | DnaT-like ssDNA-binding domain-containing | |||
| 6105 | 139 aa hypothetical protein | |||
| 6110 | M | M.EcoPT62ORF6105P (100% identity) | M.EcoLP51ORF6110P | |
| 6115 | DUF551 domain-containing protein | |||
| 9065 | HD domain-containing protein | |||
| 9070 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoLP51DcmP |
| 9075 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.EcoLP51DcmP |
| 9080 | drug/metabolite exporter YedA | |||
| 17495 | phage holin, lambda family | |||
| 17500 | M | M.EcoPT62ORF17510P (100% identity) | M.EcoLP51ORF17500P | |
| 17505 | 67 aa hypothetical protein | |||
| 17530 | LexA family transcriptional regulator | |||
| 17535 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoLP51ORF17535P |
| 17540 | PerC family transcriptional regulator | |||
| 20590 | glyoxylate bypass operon transcriptional | |||
| 20595 | M | M.EcoPT62ORF20600P (100% identity) | CCWGG | M.EcoLP51ORF20595P |
| 20600 | bifunctional isocitrate dehydrogenase | |||
| plasmid pLP5-1-106kb | ||||
| 22560 | 103 aa hypothetical protein | |||
| 22565 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoLP51ORF22565P |
| 22570 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17325 | 300 aa hypothetical protein | |||
| 17330 | R | EcoPT62GmrSDP (100% identity) | EcoLP51GmrSDP | |
| 17335 | recombinase family protein | |||