Escherichia coli DC71 |
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Putative Escherichia coli DC71 RM systems
Ref: Sun,Y. and Ji,X. unpublished
REBASE ref # 34955
| Sequence length: | GenBank #: | |
| Chromosome: | 4,752,465 bp | CP101615 |
| plasmid pDC71-1: | 92,506 bp | CP101616 |
| plasmid pDC71-2: | 74,006 bp | CP101617 |
| plasmid pDC71-3: | 72,929 bp | CP101618 |
REBASE acronym: EcoDC71
Org_num: 60626
All begin NOF56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5745 | IS1 family transposase | |||
| 5750 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoDC71ORF5760P |
| 5755 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoDC71ORF5760P |
| 5760 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoDC71ORF5760P |
| 5765 | integrase core domain-containing protein | |||
| 13705 | transcription factor | |||
| 13710 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoDC71ORF13710P |
| 13715 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.EcoDC71ORF13710P |
| 13720 | DUF4433 domain-containing protein | |||
| 13725 | macro domain-containing protein | |||
| 13730 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoDC71ORF13710P |
| 13735 | M48 family metallopeptidase | |||
| plasmid pDC71-3 | ||||
| 23960 | type II toxin-antitoxin system Phd/YefM family | |||
| 23965 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoDC71ORF23965P |
| 23970 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.EcoDC71ORF23965P |
| 23975 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcoDC71ORF23965P |
| 23980 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1950 | cell division protein DamX | |||
| 1955 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoDC71DamP |
| 1960 | ribulose-phosphate 3-epimerase | |||
| 2575 | DUF2556 family protein | |||
| 2580 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoDC71ORF2580P |
| 2585 | DNA-binding transcriptional regulator Fis | |||
| 9010 | phosphohydrolase | |||
| 9015 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoDC71DcmP |
| 9020 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoDC71DcmP |
| 9025 | drug/metabolite exporter YedA | |||
| 21780 | 345 aa hypothetical protein | |||
| 21785 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoDC71ORF21785P |
| 21790 | 68 aa hypothetical protein | |||
| plasmid pDC71-1 | ||||
| 23210 | TerB family tellurite resistance protein | |||
| 23225 | M | M.SflFF3ORF25150P (100% identity) | M.EcoDC71ORF23225P | |
| 23230 | recombination-associated protein RdgC | |||
| plasmid pDC71-2 | ||||
| 23610 | 103 aa hypothetical protein | |||
| 23615 | M | M.SenST46ORF25580P (100% identity) | M.EcoDC71ORF23615P | |
| 23620 | 73 aa hypothetical protein | |||
| plasmid pDC71-3 | ||||
| 24065 | 103 aa hypothetical protein | |||
| 24070 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoDC71ORF24070P |
| 24075 | 73 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14915 | replication endonuclease | |||
| 14920 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoDC71ORF14920P |
| 14925 | TraR/DksA family transcriptional regulator | |||