Escherichia coli TUM2330 |
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Putative Escherichia coli TUM2330 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,991,111 bp | AP026471 |
| plasmid pMTY2330_IncN: | 50,698 bp | AP026474 |
| plasmid pMTY2330_NA1: | 93,433 bp | AP026472 |
REBASE acronym: EcoM2330
Org_num: 60404
All begin TUM2330_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22300 | 550 aa hypothetical protein | |||
| 22310 | R | EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | EcoM2330ORF22320P |
| 22320 | M | M.SflTORF4636P (98% identity) | CCANNNNNNNNNTTGG | M.EcoM2330ORF22320P |
| 22330 | S | S.EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | S.EcoM2330ORF22320P |
| 22340 | endoribonuclease SymE | |||
| 22760 | restriction methylase | |||
| 22770 | M | M.EcoZ151ORF20915P (100% identity) | CCANNNNNNNNNTTGG | M.EcoM2330ORF22770P |
| 22780 | S | S.EcoZ151ORF20915P (100% identity) | CCANNNNNNNNNTTGG | S.EcoM2330ORF22770P |
| 22790 | R | EcoZ151ORF20915P (100% identity) | CCANNNNNNNNNTTGG | EcoM2330ORF22770P |
| 22800 | alcohol dehydrogenase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2150 | phosphohydrolase | |||
| 2160 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.EcoM2330DcmP |
| 2170 | V | V.EcosE1DcmP (74% identity) | V.EcoM2330DcmP | |
| 2180 | inner membrane transporter YedA | |||
| 21830 | crossover junction endodeoxyribonuclease rusA | |||
| 21840 | M | M.EcosA32ORF3630P (100% identity) | GATC | M.EcoM2330ORF21840P |
| 21850 | 57 aa hypothetical protein | |||
| 22720 | 216 aa hypothetical protein | |||
| 22730 | R | EcoZ151ORF20895P (100% identity) | EcoM2330ORF22730P | |
| 22740 | mcrBC 5-methylcytosine restriction system | |||
| 31990 | cell division protein DamX | |||
| 32000 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoM2330DamP |
| 32010 | ribulose-phosphate 3-epimerase | |||
| 32980 | acrEF/envCD operon repressor | |||
| 32990 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoM2330ORF32990P |
| 33000 | DNA-binding protein Fis | |||
| plasmid pMTY2330_IncN | ||||
| 47160 | IS6 family transposase | |||
| 47170 | R | YpsR1ORFAP (99% identity) | CCWGG | EcoM2330ORF47180P |
| 47180 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoM2330ORF47180P |
| 47190 | 88 aa hypothetical protein | |||
| plasmid pMTY2330_NA1 | ||||
| 46020 | 141 aa hypothetical protein | |||
| 46030 | M | M.Sen9860ORF25540P (100% identity) | M.EcoM2330ORF46030P | |
| 46040 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22340 | endoribonuclease SymE | |||
| 22350 | R | EcoCh1GmrSDP (99% identity) | EcoM2330GmrSDP | |
| 22360 | DUF1127 domain-containing protein | |||
| 22730 | restriction endonuclease | |||
| 22740 | R | EcoZ151McrCP (100% identity) | EcoM2330McrCP | |
| 22750 | R | EcoZ151McrBP (100% identity) | EcoM2330McrBP | |
| 22760 | restriction methylase | |||