Escherichia coli Z0117EC0013 |
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Putative Escherichia coli Z0117EC0013 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 34694
| Sequence length: | GenBank #: | |
| Chromosome: | 4,909,078 bp | CP098219 |
| plasmid pZ0117EC0013-1: | 103,564 bp | CP098220 |
REBASE acronym: EcoC0013
Org_num: 59590
All begin NBY13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1865 | helix-turn-helix domain-containing protein | |||
| 1870 | M | M.Pre393ORF2750P (100% identity) | M.EcoC0013ORF1870P | |
| 1875 | S | S.EcotcmA3ORF16550P (100% identity) | S.EcoC0013ORF1870P | |
| 1880 | RecQ family ATP-dependent DNA helicase | |||
| 1885 | DNA-protecting protein DprA | |||
| 1890 | R | EcotcmA3ORF16550P (100% identity) | EcoC0013ORF1870P | |
| 1895 | IS3-like element ISSen4 family transposase | |||
| 5320 | ash family protein | |||
| 5325 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0013ORF5330P |
| 5330 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0013ORF5330P |
| 5335 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0013ORF5330P |
| 5340 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pZ0117EC0013-1 | ||||
| 24375 | type II toxin-antitoxin system Phd/YefM family | |||
| 23700 | M | M.SenceORFJP (100% identity) | M.EcoC0013ORF23700P | |
| 23705 | S | S.Eco109497ORF4840P (100% identity) | S.EcoC0013ORF23700P | |
| 23710 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3085 | 97 aa hypothetical protein | |||
| 3090 | R | Ecos19ORF20635P (100% identity) | EcoC0013ORF3090P | |
| 3095 | response regulator receiver domain | |||
| 3100 | ATP-binding protein | |||
| 3105 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoC0013ORF3105P |
| 3110 | 174 aa hypothetical protein | |||
| 3375 | helix-turn-helix domain-containing protein | |||
| 3380 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0013ORF3380P |
| 3385 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0013ORF3380P |
| 3390 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0013ORF3380P |
| 3395 | McrC family protein | |||
| 14070 | drug/metabolite exporter YedA | |||
| 14075 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0013DcmP |
| 14080 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoC0013DcmP |
| 14085 | phosphohydrolase | |||
| 21175 | DNA-binding transcriptional regulator Fis | |||
| 21180 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0013ORF21180P |
| 21185 | DUF2556 family protein | |||
| 21775 | ribulose-phosphate 3-epimerase | |||
| 21780 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0013DamP |
| 21785 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3390 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3395 | R | EcosS9McrCP (100% identity) | EcoC0013McrCP | |
| 3400 | R | EcosS3McrBP (100% identity) | EcoC0013McrBP | |
| 3405 | glycosyltransferase | |||