Escherichia coli Z0117EC0054 |
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Putative Escherichia coli Z0117EC0054 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 34694
| Sequence length: | GenBank #: | |
| Chromosome: | 5,072,432 bp | CP098206 |
| plasmid pZ0117ECO054-1: | 173,366 bp | CP098207 |
REBASE acronym: Eco0054
Org_num: 59595
All begin NBY18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20760 | adenine/cytosine-specific restriction | |||
| 20765 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | Eco0054ORF20770P |
| 20770 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.Eco0054ORF20770P |
| 20775 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco0054ORF20770P |
| 20780 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1975 | cell division protein DamX | |||
| 1980 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco0054DamP |
| 1985 | ribulose-phosphate 3-epimerase | |||
| 2575 | DUF2556 family protein | |||
| 2580 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco0054ORF2580P |
| 2585 | DNA-binding transcriptional regulator Fis | |||
| 6205 | PerC family transcriptional regulator | |||
| 6210 | M | M.Ecoppa1ORF22275P (100% identity) | GATC | M.Eco0054ORF6210P |
| 6215 | LexA family transcriptional regulator | |||
| 10430 | phosphohydrolase | |||
| 10435 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco0054DcmP |
| 10440 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco0054DcmP |
| 10445 | drug/metabolite exporter YedA | |||
| 13695 | 39 aa hypothetical protein | |||
| 13715 | M | M.SboBSORF1444P (100% identity) | A | M.Eco0054ORF13715P |
| 13720 | TrmB family transcriptional regulator | |||
| 17670 | LexA family transcriptional regulator | |||
| 17675 | M | M.EcosEC8ORF20220P (100% identity) | GATC | M.Eco0054ORF17675P |
| 17680 | PerC family transcriptional regulator | |||
| 23580 | phage portal protein | |||
| 23585 | M | M.Ecos641ORF25P (99% identity) | M.Eco0054ORF23585P | |
| 23590 | 318 aa hypothetical protein | |||
| plasmid pZ0117ECO054-1 | ||||
| 25030 | thermonuclease family protein | |||
| 25035 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco0054ORF25035P |
| 25040 | 55 aa hypothetical protein | |||
| 25570 | 277 aa hypothetical protein | |||
| 25575 | M | M.YpsF1ORFDP (95% identity) | M.Eco0054ORF25575P | |
| 25580 | DNA-binding protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6405 | recombinase family protein | |||
| 6410 | R | EspFAAGmrSDP (100% identity) | Eco0054GmrSDP | |
| 6415 | DinI-like family protein | |||
| 20755 | GTPase | |||
| 20760 | R | EcosS1MrrP (100% identity) | Eco0054MrrP | |
| 20765 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14585 | NinE family protein | |||
| 14590 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco0054ORF14590P |
| 14595 | recombination protein NinB | |||