Escherichia coli isolate 624 |
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Putative Escherichia coli isolate 624 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 5,213,381 bp | OW967003 |
| plasmid P1: | 145,385 bp | OW967004 |
| plasmid P5: | 45,090 bp | OW967008 |
REBASE acronym: Eco624
Org_num: 58625
All begin AI2834V1_, AI2834V1_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid P1 | ||||
| 4854 | 251 aa hypothetical protein | |||
| 4855 | R | Sen59ORF24615P (99% identity) | GATGNNNNNCTG | Eco624ORF4857P |
| 4856 | S | S.Sen59ORF24615P (100% identity) | GATGNNNNNCTG | S.Eco624ORF4857P |
| 4857 | M | M.Sen59ORF24615P (99% identity) | GATGNNNNNCTG | M.Eco624ORF4857P |
| 4858 | metal chaperone YciC | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 180 | 231 aa hypothetical protein | |||
| 181 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco624DcmP |
| 182 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco624DcmP |
| 183 | inner membrane transporter YedA | |||
| 455 | DNA replication and repair protein RecF | |||
| 456 | M | M.EcoWH333ORF4405P (100% identity) | TGGCCA | M.Eco624ORF456P |
| 457 | 947 aa hypothetical protein | |||
| 2285 | RM | Ecoppa2ORF12080P (18% identity) | Eco624ORF2285BP | |
| 90 | pseudogene | |||
| 167 | IS3 family transposase | |||
| 2286 | 121 aa hypothetical protein | |||
| 2287 | 301 aa hypothetical protein | |||
| 2288 | RM | EcoZ30ORF19095P (79% identity) | Eco624ORF2285AP | |
| 2289 | RNA polymerase-associated protein RapA | |||
| 2299 | 42 aa hypothetical protein | |||
| 2300 | R | Ecoppa2ORF12035P (100% identity) | Eco624ORF2300P | |
| 2301 | Endonuclease NucS | |||
| 2592 | LexA repressor | |||
| 2593 | M | M.EcoSCU484ORF22615P (100% identity) | GATC | M.Eco624ORF2593P |
| 2594 | 162 aa hypothetical protein | |||
| 3355 | Cell division protein DamX | |||
| 3356 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco624DamP |
| 3357 | Ribulose-phosphate 3-epimerase | |||
| 3456 | 59 aa hypothetical protein | |||
| 3457 | M | M.Ecoppa2ORF6235P (100% identity) | ATGCAT | M.Eco624ORF3457P |
| 3458 | DNA-binding protein Fis | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid P5 | ||||
| 5264 | Transposon Tn3 resolvase | |||
| 5265 | M | M.Yenp29930ORFAP (100% identity) | CCGCAG | M.Eco624ORF5265P |
| 5266 | R | Eco338ORFHP (99% identity) | CCGCAG | Eco624ORF5265P |
| 5267 | Phospholipase D | |||