Escherichia coli isolate 23 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli isolate 23 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 4,879,412 bp | OW848980 |
| plasmid P2: | 97,252 bp | OW848982 |
| plasmid P3: | 39,780 bp | OW848983 |
REBASE acronym: Eco23
Org_num: 58525
All begin AI2715V1_, AI2715V1_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 121 | transposase, partial | |||
| 667 | R | Eco403CCORF26150P (99% identity) | Eco23ORF669P | |
| 668 | S | S.Eco03C12ORF22605P (70% identity) | S.Eco23ORF669P | |
| 669 | M | M.Eal1823BORFDP (99% identity) | M.Eco23ORF669P | |
| 670 | GTPase Era | |||
| 15 | pseudogene | |||
| 1115 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco23ORF1117P |
| 1116 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco23ORF1117P |
| 1117 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco23ORF1117P |
| 1118 | Nucleoid occlusion protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 340 | Cell division protein DamX | |||
| 341 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco23DamP |
| 342 | Ribulose-phosphate 3-epimerase | |||
| 1811 | 231 aa hypothetical protein | |||
| 1812 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco23DcmP |
| 1813 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco23DcmP |
| 1814 | inner membrane transporter YedA | |||
| 2928 | 273 aa hypothetical protein | |||
| 2929 | M | M.EcoO78ORF7950P (100% identity) | GATC | M.Eco23ORF2929P |
| 2930 | 75 aa hypothetical protein | |||
| 3266 | 64 aa hypothetical protein | |||
| 3267 | M | M.EcoO78ORF6265P (99% identity) | M.Eco23ORF3267P | |
| 3268 | 67 aa hypothetical protein | |||
| 3274 | LexA repressor | |||
| 3275 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco23ORF3275P |
| 3276 | 162 aa hypothetical protein | |||
| 3884 | 428 aa hypothetical protein | |||
| 3885 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco23ORF3886P |
| 3886 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco23ORF3886P |
| 3887 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco23ORF3886P |
| 110 | IS21-like element helper ATPase IstB | |||
| plasmid P2 | ||||
| 4744 | 308 aa hypothetical protein | |||
| 4745 | M | M.SspPIBORF23080P (100% identity) | M.Eco23ORF4745P | |
| 4746 | 73 aa hypothetical protein | |||
| plasmid P3 | ||||
| 4863 | 190 aa hypothetical protein | |||
| 4864 | R | Sma31ORF25925P (96% identity) | CTCGAG | Eco23ORF4864P |
| 4865 | 82 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 1549 | DNA-invertase hin | |||
| 1550 | R | Ecochi7122GmrSDP (100% identity) | Eco23GmrSDP | |
| 29 | pseudogene | |||
| 3882 | teichuronic acid biosynthesis | |||
| 3883 | R | EcosS3McrBP (100% identity) | Eco23McrBP | |
| 3884 | R | EcosS9McrCP (100% identity) | Eco23McrCP | |
| 3885 | 579 aa hypothetical protein | |||