Helicobacter pylori Hpfe0001 |
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Putative Helicobacter pylori Hpfe0001 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,649,959 bp
GenBank #: CP094173
REBASE acronym: Hpyfe1
Org_num: 57265
All begin MPG49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4790 | hydroxyethylthiazole kinase | |||
| 4795 | R | HpyJ009ORF2695P (97% identity) | CAANNNNNNNNTTC | Hpyfe1ORF4805P |
| 4800 | S | S.Hpyfe1ORF4500P (100% identity) | CAANNNNNNNNTTC | S.Hpyfe1ORF4805P |
| 4805 | M | M.HpyCHN4IX (97% identity) | CAANNNNNNNNTTC | M.Hpyfe1ORF4805P |
| 4810 | phosphatase PAP2 family protein | |||
| 5080 | type I restriction endonuclease | |||
| 5085 | R | HpyUM038ORF2100P (69% identity) | CTANNNNNNTC | Hpyfe1ORF5090P |
| 5090 | M | M.Hpyfe114ORF4890P (98% identity) | CTANNNNNNTC | M.Hpyfe1ORF5090P |
| 5095 | S | S.Hpyfe28ORF4840P (97% identity) | CTANNNNNNTC | S.Hpyfe1ORF5090P |
| 5105 | RNA degradosome polyphosphate kinase | |||
| 7695 | M48 family metallopeptidase | |||
| 7700 | R | Hpy63ORF1444P (96% identity) | Hpyfe1ORF7705P | |
| 7705 | M | M.Hpyfe120ORF7670P (97% identity) | M.Hpyfe1ORF7705P | |
| 7710 | S | S.HpyID8VI (46% identity) | S.Hpyfe1ORF7705P | |
| 7715 | integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpyQ59ORFVP (65% identity) | Hpyfe1ORF50P | |
| 55 | integrase | |||
| 295 | outer membrane protein | |||
| 300 | R | HpyK028ORF6985P (97% identity) | CCATC | Hpyfe1ORF305P |
| 305 | M | M1.Hpyfe5ORF140P (99% identity) | CCATC | M1.Hpyfe1ORF305P |
| 310 | M | M1.HpyT027III (99% identity) | CCATC | M2.Hpyfe1ORF305P |
| 315 | LptF/LptG family permease | |||
| 440 | ComF family protein | |||
| 445 | RM | HpyBS07ORF4765P (98% identity) | CYANNNNNNTTC | Hpyfe1ORF445P |
| 450 | S | S.HpyOK308ORFCP (69% identity) | S.Hpyfe1ORF445P | |
| 455 | DNA polymerase I | |||
| 1580 | serine O-acetyltransferase | |||
| 1585 | R | HpyV004IP (98% identity) | CATG | Hpyfe1ORF1590P |
| 1590 | M | M.HpyF18KORF1187P (98% identity) | CATG | M.Hpyfe1ORF1590P |
| 1595 | HAD family hydrolase | |||
| 2045 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2050 | M | M.Hpyfe13ORF2040P (98% identity) | GCGC | M.Hpyfe1ORF2050P |
| 2055 | 144 aa hypothetical protein | |||
| 2230 | Laminin subunit alpha-2 precursor | |||
| 2235 | R | Hpyfe80ORF2045P (98% identity) | TCNNGA | Hpyfe1ORF2240P |
| 2240 | M | M.HpyK007ORF5110P (98% identity) | TCNNGA | M.Hpyfe1ORF2240P |
| 2245 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2890 | ATP-dependent helicase | |||
| 2895 | M | M.HpyJ012VII (98% identity) | GTNNAC | M.Hpyfe1ORF2895P |
| 2900 | R | HpyTW22XP (97% identity) | GTNNAC | Hpyfe1ORF2895P |
| 2905 | flagellar hook protein FlgE | |||
| 3905 | (Fe-S)-binding protein | |||
| 3910 | RM | HpyK118ORF3440P (90% identity) | Hpyfe1ORF3910P | |
| 3915 | outer membrane protein | |||
| 4970 | catalase | |||
| 4975 | R | HpyT016ORF2465P (97% identity) | ACGT | Hpyfe1ORF4980P |
| 4980 | M | M.Hpy52ORF465P (97% identity) | ACGT | M.Hpyfe1ORF4980P |
| 4985 | GIY-YIG nuclease family protein | |||
| 4980 | DNA cytosine methyltransferase | |||
| 4985 | R | Hpyfe88ORF4775P (99% identity) | ACNGT | Hpyfe1ORF4990P |
| 4990 | M | M.Hpyfe58ORF5050P (92% identity) | M.Hpyfe1ORF4990P | |
| 4995 | translational GTPase TypA | |||
| 5000 | lipopolysaccharide heptosyltransferase family | |||
| 5005 | M | M.Hpyfe39ORF4900P (98% identity) | ATTAAT | M.Hpyfe1ORF5005P |
| 5010 | Hop family outer membrane protein HopJ/HopK | |||
| 5725 | 125 aa hypothetical protein | |||
| 5730 | M | M.HpyP87ORFHP (100% identity) | CTNAG | M.Hpyfe1ORF5730P |
| 5735 | R | HpyK110VIP (98% identity) | CTNAG | Hpyfe1ORF5730P |
| 5740 | polysaccharide deacetylase | |||
| 5970 | AAA family ATPase | |||
| 5975 | M | M.HpySG38V (100% identity) | CCGG | M.Hpyfe1ORF5975P |
| 5980 | R | HpyK035ORF1405P (92% identity) | CCGG | Hpyfe1ORF5975P |
| 5985 | 204 aa hypothetical protein | |||
| 5985 | 204 aa hypothetical protein | |||
| 5990 | M | M.Hpyfe81ORF1785P (98% identity) | TCGA | M.Hpyfe1ORF5990P |
| 5995 | exodeoxyribonuclease VII large subunit | |||
| 6400 | pseudaminic acid synthase | |||
| 6405 | R | R2.HpyH015ORF850P (86% identity) | R2.Hpyfe1ORF6415P | |
| 6410 | R | Hpy271McrBP (96% identity) | R1.Hpyfe1ORF6415P | |
| 6415 | M | M.HpyK119ORF925P (98% identity) | M.Hpyfe1ORF6415P | |
| 6420 | elongation factor P | |||
| 6805 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6810 | M | M.Hpyfe86ORF6540P (97% identity) | GATC | M.Hpyfe1ORF6810P |
| 6815 | R | Hpyfe23ORF6770P (95% identity) | GATC | Hpyfe1ORF6810P |
| 6825 | ACP S-malonyltransferase | |||
| 6995 | sodium/proline symporter PutP | |||
| 7000 | M | M1.Hpyfe36ORF6790P (99% identity) | M1.Hpyfe1ORF7000P | |
| 7005 | M | M1.Hpyfe8ORF145P (97% identity) | CCTC | M2.Hpyfe1ORF7000P |
| 7010 | agmatine deiminase family protein | |||
| 7050 | S41 family peptidase | |||
| 7055 | R | HpyTW09IIIP (51% identity) | R1.Hpyfe1ORF7070P | |
| 7060 | R | R2.Hpyfe62ORF6835P (100% identity) | R2.Hpyfe1ORF7070P | |
| 7065 | 56 aa hypothetical protein | |||
| 7070 | M | M.HpyK112VI (40% identity) | M.Hpyfe1ORF7070P | |
| 7075 | 354 aa hypothetical protein | |||
| 7075 | 354 aa hypothetical protein | |||
| 7080 | RM | HpySG03ORF445P (94% identity) | Hpyfe1ORF7080P | |
| 7085 | carboxylating nicotinate-nucleotide | |||
| 7600 | DUF5343 domain-containing protein | |||
| 7605 | M | M.Hpyfe97ORF7675P (99% identity) | M.Hpyfe1ORF7605P | |
| 7610 | type II restriction endonuclease | |||
| 7605 | DNA cytosine methyltransferase | |||
| 7610 | R | HpyK053XIIIP (98% identity) | TGCA | Hpyfe1ORF7615P |
| 7615 | M | M.HpyTW01III (99% identity) | TGCA | M.Hpyfe1ORF7615P |
| 7620 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpySG36ORF7270P (96% identity) | GACC | M.Hpyfe1ORF40P |
| 45 | R | Hpyfe124ORF40P (97% identity) | GACC | Hpyfe1ORF40P |
| 50 | Eco57I restriction-modification methylase | |||
| 795 | type III restriction endonuclease subunit R | |||
| 800 | R | Hpyfe96ORF675P (95% identity) | Hpyfe1ORF805P | |
| 805 | M | M.HpyOK68ORFCP (97% identity) | M.Hpyfe1ORF805P | |
| 810 | DNA/RNA non-specific endonuclease | |||
| 7135 | copper response regulator transcription factor | |||
| ??? | M | M.Hpyfe97ORF7225P (97% identity) | M.Hpyfe1ORF7140P | |
| 7145 | R | HpyOK30ORFVP (95% identity) | Hpyfe1ORF7140P | |
| 7150 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3140 | type I glutamate--ammonia ligase | |||
| 3145 | R | HpyTW02GmrSDP (82% identity) | Hpyfe1GmrSDP | |
| 3150 | 50S ribosomal protein L9 | |||
| 3720 | sel1 repeat family protein | |||
| 3725 | R | HpyK009GmrSD2P (95% identity) | Hpyfe1GmrSD2P | |
| 3730 | NAD(P)H-dependent oxidoreductase | |||