Helicobacter pylori Hpfe061 |
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Putative Helicobacter pylori Hpfe061 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,613,185 bp
GenBank #: CP094120
REBASE acronym: Hpyfe61
Org_num: 57308
All begin MPG74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4820 | hydroxyethylthiazole kinase | |||
| 4825 | R | HpyH137ORF5035P (96% identity) | CCANNNNNNNNTGG | Hpyfe61ORF4835P |
| 4830 | S | S.Hpyfe61ORF4540P (100% identity) | CCANNNNNNNNTGG | S.Hpyfe61ORF4835P |
| 4835 | M | M.HpyMA06XIV (97% identity) | CCANNNNNNNNTGG | M.Hpyfe61ORF4835P |
| 4840 | phosphatase PAP2 family protein | |||
| 5100 | type I restriction endonuclease | |||
| 5105 | R | HpyJSHR31ORF9580P (70% identity) | GACNNNNNTAA | Hpyfe61ORF5110P |
| 5110 | M | M.Hpy1100ORFGP (98% identity) | GACNNNNNTAA | M.Hpyfe61ORF5110P |
| 5115 | S | S.HpyHP94VI (98% identity) | GACNNNNNTAA | S.Hpyfe61ORF5110P |
| 5125 | RNA degradosome polyphosphate kinase | |||
| 7695 | M48 family metallopeptidase | |||
| 7700 | R | Hpy04ORFKP (97% identity) | Hpyfe61ORF7705P | |
| 7705 | M | M.HpyPE103ORF7520P (98% identity) | M.Hpyfe61ORF7705P | |
| 7710 | S | S.HpyT030ORF7170P (45% identity) | S.Hpyfe61ORF7705P | |
| 7715 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyF225ORFDP (92% identity) | Hpyfe61ORF55P | |
| 60 | RNA-directed DNA polymerase | |||
| 140 | outer membrane protein | |||
| 145 | R | Hpyfe57ORF140P (97% identity) | CCATC | Hpyfe61ORF150P |
| 150 | M | M1.Hpyfe88ORF155P (99% identity) | CCATC | M1.Hpyfe61ORF150P |
| 155 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M2.Hpyfe61ORF150P |
| 160 | LptF/LptG family permease | |||
| 290 | VRR-NUC domain-containing protein | |||
| 295 | R | HpyK041ORF7070P (100% identity) | Hpyfe61ORF300P | |
| 300 | M | M.Hpyfe78ORF290P (99% identity) | M.Hpyfe61ORF300P | |
| 305 | S | S1.HpyMM01ORF7085P (70% identity) | S1.Hpyfe61ORF300P | |
| 310 | S | S2.Hpyfe7ORF260P (89% identity) | S2.Hpyfe61ORF300P | |
| 315 | DNA polymerase I | |||
| 1620 | serine O-acetyltransferase | |||
| 1625 | R | HpyTW01IP (93% identity) | CATG | Hpyfe61ORF1630P |
| 1630 | M | M.Hpyfe97ORF1435P (98% identity) | CATG | M.Hpyfe61ORF1630P |
| 1635 | HAD family hydrolase | |||
| 2080 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2085 | M | M.Hpyfe88ORF1870P (98% identity) | GCGC | M.Hpyfe61ORF2085P |
| 2090 | 144 aa hypothetical protein | |||
| 2255 | Laminin subunit alpha-2 precursor | |||
| 2260 | R | HpyUM023ORF8180P (98% identity) | TCNNGA | Hpyfe61ORF2265P |
| 2265 | M | M.HpyH137ORF2120P (99% identity) | TCNNGA | M.Hpyfe61ORF2265P |
| 2270 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2920 | ATP-dependent helicase | |||
| 2925 | M | M.HpyK021VII (97% identity) | GTNNAC | M.Hpyfe61ORF2925P |
| 2930 | R | HpyTW08IXP (98% identity) | GTNNAC | Hpyfe61ORF2925P |
| 2935 | flagellar hook protein FlgE | |||
| 3130 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3135 | M | M.HpyAR9VI (99% identity) | GTAC | M.Hpyfe61ORF3135P |
| 3140 | R | Hpyfe83ORF2905P (98% identity) | GTAC | Hpyfe61ORF3135P |
| 3145 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4000 | outer membrane protein | |||
| 4005 | RM | HpyK041ORF3595P (92% identity) | Hpyfe61ORF4005P | |
| 4010 | (Fe-S)-binding protein | |||
| 4990 | catalase | |||
| 4995 | R | HpyK004ORF2420P (98% identity) | ACGT | Hpyfe61ORF5000P |
| 5000 | M | M.HpyME43ORF2225P (99% identity) | ACGT | M.Hpyfe61ORF5000P |
| 5005 | GIY-YIG nuclease family protein | |||
| 5000 | DNA cytosine methyltransferase | |||
| 5005 | R | HpyOK313ORFMP (100% identity) | ACNGT | Hpyfe61ORF5010P |
| 5010 | M | M.HpyTW22ORF2290P (97% identity) | ACNGT | M.Hpyfe61ORF5010P |
| 5015 | translational GTPase TypA | |||
| 5020 | lipopolysaccharide heptosyltransferase family | |||
| 5025 | M | M.HpyJ019IV (98% identity) | ATTAAT | M.Hpyfe61ORF5025P |
| 5030 | Hop family outer membrane protein HopJ/HopK | |||
| 5970 | AAA family ATPase | |||
| 5975 | M | M.HpyK035ORF1405P (98% identity) | CCGG | M.Hpyfe61ORF5975P |
| 5980 | R | HpyTW19IIP (96% identity) | CCGG | Hpyfe61ORF5975P |
| 5985 | 204 aa hypothetical protein | |||
| 5985 | 204 aa hypothetical protein | |||
| 5990 | M | M.HpyK014ORF5330P (98% identity) | TCGA | M.Hpyfe61ORF5990P |
| 5995 | exodeoxyribonuclease VII large subunit | |||
| 6820 | alpha-1,2-fucosyltransferase | |||
| 6825 | M | M.HpyJ016VIII (97% identity) | GATC | M.Hpyfe61ORF6825P |
| 6830 | HTH domain-containing protein | |||
| 6990 | sodium/proline symporter PutP | |||
| 6995 | R | Hpyfe23ORF6975P (95% identity) | CCTC | Hpyfe61ORF7000P |
| 7000 | M | M2.HpyK035IVP (98% identity) | CCTC | M1.Hpyfe61ORF7000P |
| 7005 | M | M1.HpyM5CORFPP (98% identity) | CCTC | M2.Hpyfe61ORF7000P |
| 7010 | agmatine deiminase family protein | |||
| 7050 | S41 family peptidase | |||
| 7055 | RM | HpyU425ORF255P (87% identity) | Hpyfe61ORF7055P | |
| 7060 | carboxylating nicotinate-nucleotide | |||
| 7110 | copper response regulator transcription factor | |||
| 7115 | R | HpyQ59ORFDP (99% identity) | GAAGA | Hpyfe61ORF7120P |
| 7120 | M | M1.Hpyfe88ORF6905P (97% identity) | GAAGA | M1.Hpyfe61ORF7120P |
| 7125 | M | M2.Hpyfe55ORF6945P (99% identity) | GAAGA | M2.Hpyfe61ORF7120P |
| 7130 | site-specific DNA-methyltransferase | |||
| 7585 | DUF5343 domain-containing protein | |||
| 7590 | M | M.HpyOK304ORFKP (99% identity) | M.Hpyfe61ORF7590P | |
| 7595 | type II restriction endonuclease | |||
| 7590 | DNA cytosine methyltransferase | |||
| 7595 | R | Hpyfe96ORF7485P (98% identity) | TGCA | Hpyfe61ORF7600P |
| 7600 | M | M.HpyUM085ORF3635P (99% identity) | TGCA | M.Hpyfe61ORF7600P |
| 7605 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyTW03XV (97% identity) | M.Hpyfe61ORF40P | |
| 45 | R | Hpyfe124ORF40P (97% identity) | Hpyfe61ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 845 | biotin synthase | |||
| 850 | R | Hpyfe74ORF640P (95% identity) | Hpyfe61ORF855P | |
| 855 | M | M.HpyT028ORF6615P (96% identity) | M.Hpyfe61ORF855P | |
| 860 | DNA/RNA non-specific endonuclease | |||
| 7125 | site-specific DNA-methyltransferase | |||
| ??? | M | M.Hpyfe52ORF6880P (96% identity) | M.Hpyfe61ORF7130P | |
| 7135 | R | Hpyfe51ORF7155P (96% identity) | Hpyfe61ORF7130P | |
| 7140 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3175 | type I glutamate--ammonia ligase | |||
| 3180 | R | Hpyfe58GmrSDP (91% identity) | Hpyfe61GmrSD2P | |
| 3185 | 50S ribosomal protein L9 | |||
| 3760 | sel1 repeat family protein | |||
| 3765 | R | HpyYN483GmrSD2P (95% identity) | Hpyfe61GmrSDP | |
| 3770 | NAD(P)H-dependent oxidoreductase | |||