Helicobacter pylori Hpfe072 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe072 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,610,658 bp
GenBank #: CP094109
REBASE acronym: Hpyfe72
Org_num: 57318
All begin MPG41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2970 | type I restriction endonuclease | |||
| 2975 | M | M.Hpyfe79ORF2985P (98% identity) | M.Hpyfe72ORF2975P | |
| 2980 | S | S.Hpyfe38ORF4705P (98% identity) | S.Hpyfe72ORF2975P | |
| 2985 | R | Hpyfe113ORF10P (97% identity) | Hpyfe72ORF2975P | |
| 2990 | hydroxyethylthiazole kinase | |||
| 3290 | cadmium-translocating P-type ATPase | |||
| 3295 | S | S.Hpy35ORF20809P (96% identity) | S.Hpyfe72ORF3295P | |
| 3300 | outer membrane beta-barrel protein HofF | |||
| 4865 | motility associated factor glycosyltransferase | |||
| 4870 | R | Hpy155ORF5340P (94% identity) | CAGNNNNNTTT | Hpyfe72ORF4875P |
| 4875 | M | M.Hpyfe16ORF3160P (97% identity) | CAGNNNNNTTT | M.Hpyfe72ORF4875P |
| 4880 | S | S.HpyT017XI (99% identity) | CAGNNNNNTTT | S.Hpyfe72ORF4875P |
| 4890 | RNA degradosome polyphosphate kinase | |||
| 7570 | M48 family metallopeptidase | |||
| 7575 | R | Hpyfe79ORF7745P (98% identity) | TCTANNNNNNCTT | Hpyfe72ORF7580P |
| 7580 | M | M.HpyC006VIII (92% identity) | TCTANNNNNNCTT | M.Hpyfe72ORF7580P |
| 7585 | CAAX protease | |||
| 7590 | S | S.HpyR11XV (95% identity) | TCTANNNNNNCTT | S.Hpyfe72ORF7580P |
| 7595 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyH390rORF60P (89% identity) | Hpyfe72ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | HpyL034IVP (82% identity) | CCATC | Hpyfe72ORF140P |
| 135 | 80 aa hypothetical protein | |||
| 140 | M | M2.HpyBG3IV (93% identity) | CCATC | M1.Hpyfe72ORF140P |
| 145 | M | M2.HpyNP09IV (99% identity) | CCATC | M2.Hpyfe72ORF140P |
| 150 | LptF/LptG family permease | |||
| 1405 | IceA2 protein | |||
| 1410 | M | M.HpyJA103I (97% identity) | CATG | M.Hpyfe72ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1860 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1865 | M | M.HpySG07XII (98% identity) | GCGC | M.Hpyfe72ORF1865P |
| 1870 | 144 aa hypothetical protein | |||
| 2040 | Laminin subunit alpha-2 precursor | |||
| 2045 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe72ORF2050P |
| 2050 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe72ORF2050P |
| 2055 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2695 | ATP-dependent helicase | |||
| 2700 | M | M.Hpyfe70ORF2820P (98% identity) | GTNNAC | M.Hpyfe72ORF2700P |
| 2705 | R | HpyTW22XP (95% identity) | GTNNAC | Hpyfe72ORF2700P |
| 2710 | flagellar hook protein FlgE | |||
| 3130 | ABC transporter permease/substrate-binding | |||
| 3135 | M | M.Hpyfe33ORF4460P (99% identity) | CGWCG | M.Hpyfe72ORF3135P |
| ??? | R | Hpyfe78ORF3885P (98% identity) | CGWCG | Hpyfe72ORF3135P |
| 3150 | osmoprotection protein | |||
| 3810 | (Fe-S)-binding protein | |||
| 3815 | RM | Hpyfe125ORF3670P (93% identity) | Hpyfe72ORF3815P | |
| 3820 | 473 aa hypothetical protein | |||
| 4675 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4680 | R | Hpyfe92ORF4945P (100% identity) | GTAC | Hpyfe72ORF4685P |
| 4685 | M | M.Hpyfe92ORF4945P (99% identity) | GTAC | M.Hpyfe72ORF4685P |
| 4690 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4770 | catalase | |||
| 4775 | R | HpyK051ORF2560P (99% identity) | ACNGT | Hpyfe72ORF4780P |
| 4780 | M | M.HpyHP22ORF45P (98% identity) | ACNGT | M.Hpyfe72ORF4780P |
| 4785 | translational GTPase TypA | |||
| 4790 | lipopolysaccharide heptosyltransferase family | |||
| 4795 | M | M.HpyK029II (98% identity) | ATTAAT | M.Hpyfe72ORF4795P |
| 4800 | Hop family outer membrane protein HopJ/HopK | |||
| 5305 | group I intron-associated PD-(D/E)XK | |||
| 5310 | M | M.HpyPU006ORF1745P (99% identity) | GCNGC | M.Hpyfe72ORF5310P |
| 5315 | translation elongation factor 4 | |||
| 5510 | 125 aa hypothetical protein | |||
| 5515 | M | M.HpyLIM9ORF1560P (99% identity) | CTNAG | M.Hpyfe72ORF5515P |
| 5520 | R | HpyAR10VP (98% identity) | CTNAG | Hpyfe72ORF5515P |
| 5525 | polysaccharide deacetylase | |||
| 5755 | AAA family ATPase | |||
| 5760 | M | M.Hpyfe97ORF6090P (99% identity) | CCGG | M.Hpyfe72ORF5760P |
| 5765 | R | HpyK052IVP (98% identity) | CCGG | Hpyfe72ORF5760P |
| 5770 | 204 aa hypothetical protein | |||
| 5770 | 204 aa hypothetical protein | |||
| 5775 | M | M.Hpyfe19ORF5775P (99% identity) | TCGA | M.Hpyfe72ORF5775P |
| 5780 | exodeoxyribonuclease VII large subunit | |||
| 6690 | alpha-1,2-fucosyltransferase | |||
| 6695 | M | M.Hpy6ORF13650P (98% identity) | GATC | M.Hpyfe72ORF6695P |
| 6700 | R | HpyJ013VIIIP (95% identity) | GATC | Hpyfe72ORF6695P |
| 6710 | ACP S-malonyltransferase | |||
| 6875 | sodium/proline symporter PutP | |||
| 6880 | M | M1.Hpyfe38ORF6870P (98% identity) | M1.Hpyfe72ORF6880P | |
| 6885 | M | M2.Hpyfe85ORF6790P (98% identity) | CCTC | M2.Hpyfe72ORF6880P |
| 6890 | agmatine deiminase | |||
| 6930 | S41 family peptidase | |||
| 6935 | R | Hpyfe29ORF6865P (97% identity) | GANTC | Hpyfe72ORF6940P |
| 6940 | M | M.Hpyfe29ORF6865P (99% identity) | GANTC | M.Hpyfe72ORF6940P |
| 6945 | N-6 DNA methylase | |||
| 6940 | site-specific DNA-methyltransferase | |||
| 6945 | RM | HpyTW23ORF265P (87% identity) | Hpyfe72ORF6945P | |
| 6950 | carboxylating nicotinate-nucleotide | |||
| 7000 | copper response regulator transcription factor | |||
| 7005 | R | HpyTW19VIP (98% identity) | GAAGA | Hpyfe72ORF7010P |
| 7010 | M | M1.Hpyfe6ORF6865P (99% identity) | GAAGA | M1.Hpyfe72ORF7010P |
| 7015 | M | M2.Hpy3sORF7330P (100% identity) | GAAGA | M2.Hpyfe72ORF7010P |
| 7020 | site-specific DNA-methyltransferase | |||
| 7480 | 105 aa hypothetical protein | |||
| 7485 | R | HpyTW24VIIP (99% identity) | TGCA | Hpyfe72ORF7490P |
| 7490 | M | M.HpySG32XIII (98% identity) | TGCA | M.Hpyfe72ORF7490P |
| 7495 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy6ORF70P (96% identity) | M.Hpyfe72ORF40P | |
| 45 | R | Hpyfe15ORF40P (98% identity) | Hpyfe72ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 625 | biotin synthase | |||
| 630 | R | Hpyfe24ORF625P (95% identity) | Hpyfe72ORF635P | |
| 635 | M | M.HpyK101ORF6705P (98% identity) | M.Hpyfe72ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 7015 | site-specific DNA-methyltransferase | |||
| 7020 | M | M.Hpyfe53ORF4105P (93% identity) | M.Hpyfe72ORF7020P | |
| 7025 | 63 aa hypothetical protein | |||
| 7030 | R | Hpyfe52ORF6880P (96% identity) | Hpyfe72ORF7020P | |
| 7035 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4050 | NAD(P)H-dependent oxidoreductase | |||
| 4055 | R | HpyP82GmrSD2P (96% identity) | Hpyfe72GmrSD2P | |
| 4060 | sel1 repeat family protein | |||
| 4635 | 50S ribosomal protein L9 | |||
| 4640 | R | HpyK041GmrSDP (90% identity) | Hpyfe72GmrSDP | |
| 4645 | type I glutamate--ammonia ligase | |||