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Putative Helicobacter pylori Hpfe102 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,607,515 bp
GenBank #: CP094076
REBASE acronym: Hpyfe102
Org_num: 57343
All begin MPG56_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3140 | DNA cytosine methyltransferase | |||
3145 | M | M.Hpyfe125ORF4500P (97% identity) | CTANNNNNNNTTC | M.Hpyfe102ORF3145P |
3150 | S | S.HpyCA20V (95% identity) | CTANNNNNNNTTC | S.Hpyfe102ORF3145P |
3155 | R | Hpyfe51ORF4665P (97% identity) | CTANNNNNNNTTC | Hpyfe102ORF3145P |
3160 | hydroxyethylthiazole kinase | |||
7610 | M48 family metallopeptidase | |||
7615 | R | HpyNP01ORF7300P (92% identity) | CCANNNNNNNTAG | Hpyfe102ORF7620P |
7620 | M | M.Hpyfe5ORF7635P (97% identity) | CCANNNNNNNTAG | M.Hpyfe102ORF7620P |
7625 | CAAX protease | |||
7630 | S | S.HpyOK44ORFHP (96% identity) | CCANNNNNNNTAG | S.Hpyfe102ORF7620P |
7635 | cagY like domain protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
55 | 711 aa hypothetical protein | |||
60 | RM | HpyUM077ORF3020P (91% identity) | Hpyfe102ORF60P | |
65 | transcription termination factor NusA | |||
265 | ComF family protein | |||
270 | RM | HpyPF57ORF7025P (97% identity) | CYANNNNNNTTC | Hpyfe102ORF270P |
275 | S | S1.HpySG38ORF7170P (96% identity) | S1.Hpyfe102ORF270P | |
280 | S | S2.Hpy4109ORFCP (92% identity) | S2.Hpyfe102ORF270P | |
285 | DNA polymerase I | |||
1410 | serine O-acetyltransferase | |||
1415 | R | HpyH390rORF1435P (96% identity) | CATG | Hpyfe102ORF1420P |
1420 | M | M.HpySG02I (99% identity) | CATG | M.Hpyfe102ORF1420P |
1425 | HAD family hydrolase | |||
1875 | flagellar biosynthesis anti-sigma factor FlgM | |||
1880 | M | M.HpyTW22XIII (98% identity) | GCGC | M.Hpyfe102ORF1880P |
1885 | 144 aa hypothetical protein | |||
2060 | Laminin subunit alpha-2 precursor | |||
2065 | R | HpyGC26ORFWP (97% identity) | TCNNGA | Hpyfe102ORF2070P |
2070 | M | M.HpyYN483ORFVP (99% identity) | TCNNGA | M.Hpyfe102ORF2070P |
2075 | acetyl-CoA carboxylase biotin carboxylase | |||
2865 | ATP-dependent helicase | |||
2870 | M | M.HpySG15XIV (97% identity) | GTNNAC | M.Hpyfe102ORF2870P |
2875 | R | Hpyfe6ORF2680P (99% identity) | GTNNAC | Hpyfe102ORF2870P |
2880 | flagellar hook protein FlgE | |||
3130 | phosphatase PAP2 family protein | |||
3135 | R | Hpyfe97ORF4935P (99% identity) | GGCC | Hpyfe102ORF3140P |
3140 | M | M.Hpyfe85ORF2990P (100% identity) | GGCC | M.Hpyfe102ORF3140P |
3145 | type I restriction-modification system subunit | |||
4020 | outer membrane protein | |||
4025 | RM | HpyTW10ORF3335P (91% identity) | Hpyfe102ORF4025P | |
4030 | (Fe-S)-binding protein | |||
4820 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
4825 | R | Hpyfe7ORF4690P (100% identity) | GTAC | Hpyfe102ORF4830P |
4830 | M | M.Hpyfe7ORF4690P (99% identity) | GTAC | M.Hpyfe102ORF4830P |
4835 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
4915 | catalase | |||
4920 | R | HpyJSHR6ORF9340P (100% identity) | ACGT | Hpyfe102ORF4925P |
4925 | M | M.Hpyfe106ORF4905P (99% identity) | ACGT | M.Hpyfe102ORF4925P |
4930 | GIY-YIG nuclease family protein | |||
4925 | DNA cytosine methyltransferase | |||
4930 | R | HpySG12IIP (99% identity) | ACNGT | Hpyfe102ORF4935P |
4935 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe102ORF4935P |
4940 | translational GTPase TypA | |||
4945 | lipopolysaccharide heptosyltransferase family | |||
4950 | M | M.HpyCHN8II (98% identity) | ATTAAT | M.Hpyfe102ORF4950P |
4955 | Hop family outer membrane protein HopJ/HopK | |||
5910 | AAA family ATPase | |||
5915 | M | M.HpyP89ORFYP (100% identity) | CCGG | M.Hpyfe102ORF5915P |
5920 | R | HpyK111IIIP (96% identity) | CCGG | Hpyfe102ORF5915P |
5925 | 64 aa hypothetical protein | |||
5925 | 64 aa hypothetical protein | |||
5930 | M | M.Hpyfe77ORF1855P (98% identity) | TCGA | M.Hpyfe102ORF5930P |
5935 | exodeoxyribonuclease VII large subunit | |||
6720 | alpha-1,2-fucosyltransferase | |||
6725 | M | M.Hpyfe96ORF6655P (98% identity) | GATC | M.Hpyfe102ORF6725P |
6730 | R | HpyTW10VIP (96% identity) | GATC | Hpyfe102ORF6725P |
6740 | ACP S-malonyltransferase | |||
6910 | sodium/proline symporter PutP | |||
6915 | M | M1.Hpyfe36ORF6790P (100% identity) | CCTC | M1.Hpyfe102ORF6915P |
6920 | M | M1.HpyCHN6IV (93% identity) | M2.Hpyfe102ORF6915P | |
6925 | agmatine deiminase | |||
6970 | DNA methyltransferase | |||
6975 | R | Hpyfe89ORF7150P (99% identity) | GANTC | Hpyfe102ORF6980P |
6980 | M | M.HpyNP09X (99% identity) | GANTC | M.Hpyfe102ORF6980P |
6985 | 337 aa hypothetical protein | |||
6980 | site-specific DNA-methyltransferase | |||
6985 | RM | Hpy828ORF6855P (26% identity) | Hpyfe102ORF6985P | |
6990 | N-6 DNA methylase | |||
6985 | 337 aa hypothetical protein | |||
6990 | RM | Hpyfe35ORF6925P (95% identity) | Hpyfe102ORF6990P | |
6995 | carboxylating nicotinate-nucleotide | |||
7045 | copper response regulator transcription factor | |||
7050 | R | HpyF227ORFHP (84% identity) | Hpyfe102ORF7050P | |
7055 | EcoRV family type II restriction endonuclease | |||
7050 | restriction endonuclease subunit R | |||
7055 | R | HpyUM077ORF3750P (98% identity) | GATATC | Hpyfe102ORF7060P |
7060 | M | M.HpyCOL210ORF6675P (98% identity) | GATATC | M.Hpyfe102ORF7060P |
7065 | site-specific DNA-methyltransferase | |||
7510 | DUF5343 domain-containing protein | |||
??? | M | M.HpyTW21ORF7220P (98% identity) | M.Hpyfe102ORF7515P | |
7525 | type II restriction endonuclease | |||
7520 | DNA cytosine methyltransferase | |||
7525 | R | Hpy192ORFSP (99% identity) | TGCA | Hpyfe102ORF7530P |
7530 | M | M.Hpy1100ORFVP (99% identity) | TGCA | M.Hpyfe102ORF7530P |
7535 | 67 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
35 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyTW21XVI (97% identity) | M.Hpyfe102ORF40P | |
50 | R | Hpyfe125ORF40P (98% identity) | Hpyfe102ORF40P | |
55 | 711 aa hypothetical protein | |||
630 | biotin synthase | |||
635 | R | Hpyfe125ORF610P (98% identity) | Hpyfe102ORF640P | |
640 | M | M.HpyJA107ORF6580P (96% identity) | M.Hpyfe102ORF640P | |
645 | DNA/RNA non-specific endonuclease | |||
7060 | Dam family site-specific | |||
7065 | M | M.HpyUM065ORF2245P (98% identity) | M.Hpyfe102ORF7065P | |
7070 | R | Hpyfe16ORFAP (95% identity) | Hpyfe102ORF7065P | |
7075 | rod shape-determining protein MreC | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
4205 | NAD(P)H-dependent oxidoreductase | |||
4210 | R | HpyU005GmrSD2P (88% identity) | Hpyfe102GmrSD2P | |
4215 | sel1 repeat family protein | |||
4780 | 50S ribosomal protein L9 | |||
4785 | R | Hpyfe78GmrSDP (88% identity) | Hpyfe102GmrSDP | |
4790 | type I glutamate--ammonia ligase |