Helicobacter pylori Hpfe110 |
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Putative Helicobacter pylori Hpfe110 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,664,142 bp
GenBank #: CP094066
REBASE acronym: Hpyfe110
Org_num: 57349
All begin MPG46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3760 | outer membrane beta-barrel protein HofF | |||
| 3765 | S | S.Hpyfe125ORF4500P (98% identity) | CCANNNNNNRTAY | S.Hpyfe110ORF3765P |
| 3770 | cadmium-translocating P-type ATPase | |||
| 4055 | hydroxyethylthiazole kinase | |||
| 4060 | R | Hpyfe99ORF4915P (97% identity) | Hpyfe110ORF4070P | |
| 4065 | S | S.HpyOK34ORFVP (95% identity) | S.Hpyfe110ORF4070P | |
| 4070 | M | M.HpyTW08ORF4165P (96% identity) | M.Hpyfe110ORF4070P | |
| 4075 | DNA cytosine methyltransferase | |||
| 8055 | M48 family metallopeptidase | |||
| 8060 | R | HpyMA08VP (97% identity) | Hpyfe110ORF8065P | |
| 8065 | M | M.Hpyfe5ORF7635P (98% identity) | M.Hpyfe110ORF8065P | |
| 8070 | CAAX protease | |||
| 8075 | S | S.HpyMKM1ORF1442P (96% identity) | S.Hpyfe110ORF8065P | |
| 8080 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | Hpyfe8ORF6945P (92% identity) | Hpyfe110ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyPU006IVP (97% identity) | CCATC | Hpyfe110ORF140P |
| 140 | M | M2.HpyF93ORFBP (93% identity) | CCATC | M1.Hpyfe110ORF140P |
| 145 | M | M1.HpyCHN2IV (99% identity) | CCATC | M2.Hpyfe110ORF140P |
| 150 | LptF/LptG family permease | |||
| 280 | SAM-dependent DNA methyltransferase | |||
| 285 | R | HpySG19ORF7000P (100% identity) | GGNCC | Hpyfe110ORF290P |
| 290 | M | M.Hpyfe114ORF270P (100% identity) | GGNCC | M.Hpyfe110ORF290P |
| 295 | S | S.HpyMA18ORF7045P (64% identity) | S.Hpyfe110ORF290P | |
| 300 | DNA polymerase I | |||
| 1425 | serine O-acetyltransferase | |||
| 1430 | R | HpyK93ORF1435P (94% identity) | CATG | Hpyfe110ORF1435P |
| 1435 | M | M.HpyJA103I (98% identity) | CATG | M.Hpyfe110ORF1435P |
| 1440 | HAD family hydrolase | |||
| 1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1895 | M | M.HpyHP32XII (98% identity) | GCGC | M.Hpyfe110ORF1895P |
| 1900 | 144 aa hypothetical protein | |||
| 2075 | Laminin subunit alpha-2 precursor | |||
| 2080 | R | HpyC123IXP (94% identity) | TCNNGA | Hpyfe110ORF2085P |
| 2085 | M | M.HpyOK30ORFZP (99% identity) | TCNNGA | M.Hpyfe110ORF2085P |
| 2090 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2755 | ATP-dependent helicase | |||
| 2760 | M | M.HpyCA23XI (98% identity) | GTNNAC | M.Hpyfe110ORF2760P |
| 2765 | R | Hpy199ORFRP (98% identity) | GTNNAC | Hpyfe110ORF2760P |
| 2770 | flagellar hook protein FlgE | |||
| 4070 | type I restriction-modification system subunit | |||
| 4075 | M | M.HpyGU62AORFWP (100% identity) | GGCC | M.Hpyfe110ORF4075P |
| 4080 | R | HpyTW23ORF4140P (98% identity) | GGCC | Hpyfe110ORF4075P |
| 4085 | phosphatase PAP2 family protein | |||
| 5225 | 60 aa hypothetical protein | |||
| 5230 | R | HpyUM038ORF8675P (100% identity) | ACGT | Hpyfe110ORF5235P |
| 5235 | M | M.HpyCHN5ORF2420P (99% identity) | ACGT | M.Hpyfe110ORF5235P |
| 5240 | GIY-YIG nuclease family protein | |||
| 5235 | DNA cytosine methyltransferase | |||
| 5240 | R | Hpyfe61ORF5010P (99% identity) | ACNGT | Hpyfe110ORF5245P |
| 5245 | M | M.HpyJA103ORF2400P (98% identity) | ACNGT | M.Hpyfe110ORF5245P |
| 5250 | translational GTPase TypA | |||
| 5255 | lipopolysaccharide heptosyltransferase family | |||
| 5260 | M | M.HpySG06II (99% identity) | ATTAAT | M.Hpyfe110ORF5260P |
| 5265 | Hop family outer membrane protein HopJ/HopK | |||
| 5775 | group I intron-associated PD-(D/E)XK | |||
| 5780 | M | M.HpySG36ORF4875P (99% identity) | GCNGC | M.Hpyfe110ORF5780P |
| 5785 | translation elongation factor 4 | |||
| 5985 | 125 aa hypothetical protein | |||
| 5990 | M | M.HpyTW02VII (98% identity) | CTNAG | M.Hpyfe110ORF5990P |
| 5995 | R | HpyUM111ORF160P (100% identity) | CTNAG | Hpyfe110ORF5990P |
| 6000 | polysaccharide deacetylase | |||
| 6230 | AAA family ATPase | |||
| 6235 | M | M.Hpyfe15ORF5735P (100% identity) | CCGG | M.Hpyfe110ORF6235P |
| 6240 | R | Hpyfe93ORF5875P (95% identity) | CCGG | Hpyfe110ORF6235P |
| 6245 | 204 aa hypothetical protein | |||
| 6245 | 204 aa hypothetical protein | |||
| 6250 | M | M.Hpyfe72ORF5775P (98% identity) | TCGA | M.Hpyfe110ORF6250P |
| 6255 | exodeoxyribonuclease VII large subunit | |||
| 6660 | pseudaminic acid synthase | |||
| 6665 | R | R1.Hpyfe73ORF6475P (98% identity) | R1.Hpyfe110ORF6665P | |
| 6670 | R | R2.Hpyfe73ORF6475P (98% identity) | R2.Hpyfe110ORF6665P | |
| 6675 | 95 aa hypothetical protein | |||
| 6930 | ACP S-malonyltransferase | |||
| 6940 | R | HpyK009VP (63% identity) | GATC | Hpyfe110ORF6945P |
| 6945 | M | M.HpyMA06IX (98% identity) | GATC | M.Hpyfe110ORF6945P |
| 6950 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 7325 | DNA cytosine methyltransferase | |||
| 7330 | R | HpyML2ORFHP (94% identity) | CCTC | Hpyfe110ORF7335P |
| 7335 | M | M2.HpySG02IVP (98% identity) | CCTC | M1.Hpyfe110ORF7335P |
| 7340 | M | M2.Hpyfe12ORF7025P (98% identity) | CCTC | M2.Hpyfe110ORF7335P |
| 7345 | agmatine deiminase | |||
| 7385 | S41 family peptidase | |||
| 7390 | R | HpyV007VIP (96% identity) | GANTC | Hpyfe110ORF7395P |
| 7395 | M | M.Hpyfe10ORF6990P (99% identity) | GANTC | M.Hpyfe110ORF7395P |
| 7400 | 306 aa hypothetical protein | |||
| 7400 | 306 aa hypothetical protein | |||
| 7405 | RM | HpyOK06ORFIP (59% identity) | Hpyfe110ORF7405P | |
| 7410 | carboxylating nicotinate-nucleotide | |||
| 7460 | copper response regulator transcription factor | |||
| 7465 | R | HpyTW19VIP (97% identity) | GAAGA | Hpyfe110ORF7470P |
| 7470 | M | M2.HpyK023VI (100% identity) | GAAGA | M1.Hpyfe110ORF7470P |
| 7475 | M | M2.Hpyfe55ORF6945P (99% identity) | GAAGA | M2.Hpyfe110ORF7470P |
| 7480 | EcoRV family type II restriction endonuclease | |||
| 7480 | EcoRV family type II restriction endonuclease | |||
| 7485 | M | M.HpySH014ORF6590P (97% identity) | GATATC | M.Hpyfe110ORF7485P |
| 7490 | site-specific DNA-methyltransferase | |||
| 7945 | 134 aa hypothetical protein | |||
| 7950 | R | HpyK023XIIIP (99% identity) | TGCA | Hpyfe110ORF7955P |
| 7955 | M | M.HpyJ029XII (99% identity) | TGCA | M.Hpyfe110ORF7955P |
| 7960 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe36ORF40P (97% identity) | M.Hpyfe110ORF40P | |
| 50 | R | HpyMA21ORF7455P (96% identity) | Hpyfe110ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 630 | biotin synthase | |||
| 635 | R | HpySP110ORF325P (35% identity) | Hpyfe110ORF655AP | |
| 640 | transposase | |||
| 645 | IS607 family transposase | |||
| 650 | R | Hpy1100ORFPP (58% identity) | Hpyfe110ORF655BP | |
| 655 | M | M.HpyJ010ORF6490P (96% identity) | M.Hpyfe110ORF655P | |
| 660 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4500 | NAD(P)H-dependent oxidoreductase | |||
| 4505 | R | HpyK115GmrSD2P (95% identity) | Hpyfe110GmrSDP | |
| 4510 | sel1 repeat family protein | |||
| 5085 | 50S ribosomal protein L9 | |||
| 5090 | R | HpyH019GmrSDP (77% identity) | Hpyfe110GmrSD2P | |
| 5095 | type I glutamate--ammonia ligase | |||