Pseudomonas aeruginosa PAD8 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Pseudomonas aeruginosa PAD8 RM systems
Ref: Li,M. et al. unpublished
REBASE ref # 30616
| Sequence length: | GenBank #: | |
| Chromosome: | 6,467,494 bp | CP061073 |
| plasmid pPAD8: | 140,415 bp | CP061074 |
REBASE acronym: PaePAD8
Org_num: 57543
All begin IBG29_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12890 | peptidase M15 | |||
| 12885 | R | PaesAG1ORF6375P (96% identity) | PaePAD8ORF12875P | |
| 12880 | HNH endonuclease signature motif containing | |||
| 12875 | M | M.PaeF002ORF360P (99% identity) | M.PaePAD8ORF12875P | |
| 12870 | S | S.PaeF002ORF360P (66% identity) | S.PaePAD8ORF12875P | |
| 12865 | endonuclease NucS | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24900 | nucleoid-associated protein YejK | |||
| 24895 | M | M.PaeZM03ORFEP (100% identity) | M.PaePAD8ORF24895P | |
| 24890 | Arc family DNA-binding protein | |||
| 12065 | 183 aa hypothetical protein | |||
| 12060 | M | M.Pae22031ORF24385P (99% identity) | M.PaePAD8ORF12060P | |
| 12055 | 159 aa hypothetical protein | |||
| 30875 | 138 aa hypothetical protein | |||
| 7230 | M | M.PaeWS136ORF2370P (100% identity) | CCGCGG | M.PaePAD8ORF7230P |
| 7225 | R | R1.PaeWS136ORF2370P (100% identity) | CCGCGG | R2.PaePAD8ORF7230P |
| 7220 | R | R2.PaeWS136ORF2370P (100% identity) | CCGCGG | R1.PaePAD8ORF7230P |
| 7215 | 269 aa hypothetical protein | |||
| 7210 | V | V.PaePb18ORF2265P (100% identity) | V.PaePAD8ORF7230P | |
| 7205 | HNH endonuclease | |||
| plasmid pPAD8 | ||||
| 29945 | 76 aa hypothetical protein | |||
| 29950 | M | M.PaeSPA01ORF32110P (100% identity) | M.PaePAD8ORF29950P | |
| 29955 | recombination-associated protein RdgC | |||
| 30720 | 76 aa hypothetical protein | |||
| 30725 | M | M.PaeSPA01ORF32110P (99% identity) | M.PaePAD8ORF30725P | |
| 30730 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3795 | DNA repair protein RadC | |||
| 3790 | R | PaePD2dMcrC2P (100% identity) | PaePAD8McrCP | |
| 3785 | R | PaePD2dMcrB2P (100% identity) | PaePAD8McrBP | |
| 3780 | SprT family zinc-dependent metalloprotease | |||
| 7210 | very short patch repair endonuclease | |||
| 7205 | R | PaeLo29MrrP (100% identity) | PaePAD8MrrP | |
| 7200 | 134 aa hypothetical protein | |||