Escherichia coli Rb-23 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli Rb-23 RM systems
Ref: Matsumoto,Y. and Sugita,T. unpublished
REBASE ref # 34126
| Sequence length: | GenBank #: | |
| Chromosome: | 4,809,008 bp | AP025677 |
| plasmid pRb23_1: | 75,467 bp | AP025678 |
| plasmid pRb23_2: | 68,966 bp | AP025679 |
REBASE acronym: EcoRb23
Org_num: 56960
All begin TRECRb23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7340 | 511 aa hypothetical protein | |||
| 7350 | S | S.EcoW03ORF13795P (100% identity) | TGANNNNNNCTTT | S.EcoRb23ORF7360P |
| 7360 | M | M.EcoW03ORF13795P (100% identity) | TGANNNNNNCTTT | M.EcoRb23ORF7360P |
| 7370 | R | EcoW03ORF13795P (100% identity) | TGANNNNNNCTTT | EcoRb23ORF7360P |
| 7380 | 110 aa hypothetical protein | |||
| 8380 | 237 aa hypothetical protein | |||
| 8390 | R | EcoW03ORF14320P (100% identity) | EcoRb23ORF8410P | |
| 8400 | S | S.EcoZ247ORF19790P (100% identity) | S.EcoRb23ORF8410P | |
| 8410 | M | M.EcoW03ORF14320P (100% identity) | M.EcoRb23ORF8410P | |
| 8420 | 699 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3420 | cell division protein DamX | |||
| ??? | M | M.SspPIBDamP (100% identity) | GATC | M.EcoRb23DamP |
| 3440 | D-ribulose-5-phosphate 3-epimerase | |||
| 7910 | 59 aa hypothetical protein | |||
| 7920 | R | EcoW03ORF14070P (100% identity) | EcoRb23ORF7920P | |
| 7930 | endonuclease | |||
| 17040 | 100 aa hypothetical protein | |||
| 17050 | M | M.EcoW03ORF18570P (100% identity) | GATC | M.EcoRb23ORF17050P |
| 17060 | replication protein | |||
| 18930 | recombination protein | |||
| 18940 | M | M.Ecocs03ORF11080P (74% identity) | GATC | M.EcoRb23ORF18940P |
| 18950 | recombination endonuclease | |||
| 28110 | amino acid exporter for phenylalanine | |||
| 28120 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoRb23DcmP |
| 28130 | M | M.EcoW03DcmP (100% identity) | CCWGG | M.EcoRb23DcmP |
| 28140 | HD superfamily phosphohydrolase | |||
| plasmid pRb23_1 | ||||
| 44180 | 308 aa hypothetical protein | |||
| 44190 | M | M.EcopO26ORF90P (100% identity) | M.EcoRb23ORF44190P | |
| 44200 | 73 aa hypothetical protein | |||
| plasmid pRb23_2 | ||||
| 45030 | 308 aa hypothetical protein | |||
| 45040 | M | M.Sfl7ORF23565P (100% identity) | M.EcoRb23ORF45040P | |
| 45050 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8410 | restriction endonuclease subunit M | |||
| 8420 | R | EcoW03GmrSDP (100% identity) | EcoRb23GmrSDP | |
| 8430 | 244 aa hypothetical protein | |||