Escherichia coli WCHEC115106 |
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Putative Escherichia coli WCHEC115106 RM systems
Ref: Hu,Y. et al. unpublished
REBASE ref # 26309
| Sequence length: | GenBank #: | |
| Chromosome: | 4,803,771 bp | CP043334 |
| plasmid p1_115106: | 133,446 bp | CP043336 |
| plasmid p2_115106: | 90,994 bp | CP043337 |
| plasmid p3_115106: | 90,384 bp | CP043338 |
REBASE acronym: Eco01613
Org_num: 56817
All begin FZC46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5785 | IS1 family transposase | |||
| 5790 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco01613ORF5800P |
| 5795 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco01613ORF5800P |
| 5800 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco01613ORF5800P |
| 5805 | transposase | |||
| 14015 | transcription factor | |||
| 14020 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Eco01613ORF14020P |
| 14025 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Eco01613ORF14020P |
| 14030 | DUF4433 domain-containing protein | |||
| 14035 | macro domain-containing protein | |||
| 14040 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | Eco01613ORF14020P |
| 14045 | M48 family metallopeptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1970 | cell division protein DamX | |||
| 1975 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco01613DamP |
| 1980 | ribulose-phosphate 3-epimerase | |||
| 9310 | phosphohydrolase | |||
| 9315 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco01613DcmP |
| 9320 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco01613DcmP |
| 9325 | drug/metabolite exporter YedA | |||
| 22260 | 345 aa hypothetical protein | |||
| 22265 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.Eco01613ORF22265P |
| 22270 | 68 aa hypothetical protein | |||
| plasmid p1_115106 | ||||
| 24385 | 73 aa hypothetical protein | |||
| 24390 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco01613ORF24390P |
| 24395 | 102 aa hypothetical protein | |||
| plasmid p2_115106 | ||||
| 24965 | recombination-associated protein RdgC | |||
| 24970 | M | M.Eco31SOC03ORF23510P (98% identity) | M.Eco01613ORF24970P | |
| 24995 | tellurite resistance protein | |||
| plasmid p3_115106 | ||||
| 25405 | 59 aa hypothetical protein | |||
| 25410 | M | M.Xca80ORFEP (100% identity) | M.Eco01613ORF25410P | |
| 25415 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13315 | isocitrate dehydrogenase | |||
| 13320 | R | EcosEC27McrCP (100% identity) | Eco01613McrCP | |
| 13325 | R | EcoteDMcrBP (100% identity) | Eco01613McrBP | |
| 13330 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7240 | recombination protein NinB | |||
| 7245 | M | M.SflLIN11ORF7170P (100% identity) | GATC | M.Eco01613ORF7245P |
| 7250 | protein ninD | |||
| 15250 | replication endonuclease | |||
| 15255 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco01613ORF15255P |
| 15260 | TraR/DksA family transcriptional regulator | |||