Escherichia coli KKo003 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli KKo003 RM systems
Ref: Gomi,R. unpublished
REBASE ref # 32053
| Sequence length: | GenBank #: | |
| Chromosome: | 4,956,558 bp | CP091682 |
| plasmid pKKo003_2: | 86,532 bp | CP091685 |
REBASE acronym: EcoKo003
Org_num: 56614
All begin L6L54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2945 | endoribonuclease SymE | |||
| 2950 | S | S.SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | S.EcoKo003ORF2955P |
| 2955 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.EcoKo003ORF2955P |
| 2960 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | EcoKo003ORF2955P |
| 2965 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10060 | TrmB family transcriptional regulator | |||
| 10065 | M | M.SflC32ORFBP (100% identity) | M.EcoKo003ORF10065P | |
| 10085 | tellurite resistance protein | |||
| 13490 | drug/metabolite exporter YedA | |||
| 13495 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoKo003DcmP |
| 13500 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoKo003DcmP |
| 13505 | phosphohydrolase | |||
| 16525 | PerC family transcriptional regulator | |||
| 16530 | M | M.Eho218ORF16395P (100% identity) | GATC | M.EcoKo003ORF16530P |
| 16535 | DUF1382 family protein | |||
| 20610 | DNA-binding transcriptional regulator Fis | |||
| 20615 | M | M.SflC32ORFAP (100% identity) | ATGCAT | M.EcoKo003ORF20615P |
| 20620 | DUF2556 family protein | |||
| 21210 | ribulose-phosphate 3-epimerase | |||
| 21215 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoKo003DamP |
| 21220 | cell division protein DamX | |||
| plasmid pKKo003_2 | ||||
| 25120 | 73 aa hypothetical protein | |||
| 25125 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoKo003ORF25125P |
| 25130 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2930 | 26 aa hypothetical protein | |||
| 2935 | R | Eho218GmrDP (40% identity) | EcoKo003GmrDAP | |
| 2940 | R | Eho218GmrDP (53% identity) | EcoKo003GmrDBP | |
| 2945 | endoribonuclease SymE | |||