Escherichia coli STLEFF_29 |
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Putative Escherichia coli STLEFF_29 RM systems
Ref: Che,Y. et al. Microbiome 10 (1), 16 (2022)
REBASE ref # 33791
| Sequence length: | GenBank #: | |
| Chromosome: | 4,902,360 bp | CP058879 |
| plasmid unnamed2: | 96,770 bp | CP058881 |
| plasmid unnamed3: | 82,730 bp | CP058882 |
| plasmid unnamed4: | 60,680 bp | CP058883 |
REBASE acronym: EcoFF29
Org_num: 56638
All begin HZT24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20105 | N-6 DNA methylase | |||
| 20110 | R | EcoWW2ORF20190P (100% identity) | CCCNNNNNGTG | EcoFF29ORF20120P |
| 20115 | S | S.SflLIN11ORF19980P (100% identity) | CCCNNNNNGTG | S.EcoFF29ORF20120P |
| 20120 | M | M2.SflLIN11ORF19980P (100% identity) | CCCNNNNNGTG | M2.EcoFF29ORF20120P |
| 20125 | M | M1.EcoWW2ORF20190P (100% identity) | CCCNNNNNGTG | M1.EcoFF29ORF20120P |
| 20130 | toll/interleukin-1 receptor domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2075 | cell division protein DamX | |||
| 2080 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoFF29DamP |
| 2085 | ribulose-phosphate 3-epimerase | |||
| 2605 | DUF2556 family protein | |||
| 2610 | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.EcoFF29ORF2610P |
| 2615 | DNA-binding transcriptional regulator Fis | |||
| 13585 | drug/metabolite exporter YedA | |||
| 13590 | V | V.EcoWW2DcmP (100% identity) | V.EcoFF29DcmP | |
| 13595 | M | M.EcoWW2DcmP (100% identity) | CCWGG | M.EcoFF29DcmP |
| 13600 | phosphohydrolase | |||
| 16880 | 63 aa hypothetical protein | |||
| 16885 | M | M.EcoWW2ORF16975P (100% identity) | M.EcoFF29ORF16885P | |
| 16890 | TrmB family transcriptional regulator | |||
| plasmid unnamed2 | ||||
| 24455 | SPFH/Band 7/PHB domain protein | |||
| 24470 | M | M.EcoLIN13ORF24290P (100% identity) | M.EcoFF29ORF24470P | |
| 24475 | recombination-associated protein RdgC | |||
| plasmid unnamed3 | ||||
| 24670 | 103 aa hypothetical protein | |||
| 24675 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoFF29ORF24675P | |
| 24680 | 73 aa hypothetical protein | |||
| plasmid unnamed4 | ||||
| 25240 | IS1 family transposase | |||
| 25245 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.EcoFF29ORF25245P |
| 25250 | R | YpsR2ORFAP (55% identity) | CCWGG | EcoFF29ORF25245P |
| 25255 | IS6-like element IS26 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20145 | 125 aa hypothetical protein | |||
| 20150 | R | EcoWW2ORF20220P (100% identity) | EcoFF29ORF20150P | |
| 20160 | NADPH-dependent aldehyde reductase Ahr | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7260 | recombination protein NinB | |||
| 7265 | M | M.SflLIN11ORF7170P (100% identity) | GATC | M.EcoFF29ORF7265P |
| 7270 | protein ninD | |||