Escherichia coli H3 |
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Putative Escherichia coli H3 RM systems
Ref: Kang,Y. et al. Brief Bioinform 22 (4) (2021)
REBASE ref # 34039
Complete sequence: 4,906,030 bp
GenBank #: CP028732
REBASE acronym: EcoHs3
Org_num: 56605
All begin AOY60_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5295 | 729 aa hypothetical protein | |||
| 5300 | M | M.Eco9003I (100% identity) | GYTANNNNNGTC | M.EcoHs3II |
| ??? | S | S.Eco9091I (100% identity) | GYTANNNNNGTC | S.EcoHs3II |
| 5310 | DUF4268 domain-containing protein | |||
| 5315 | R | Sso8ORF18020P (100% identity) | GYTANNNNNGTC | EcoHs3IIP |
| 5320 | DNA helicase UvrD | |||
| 5390 | copper resistance protein | |||
| 5395 | R | EcoE2ORF4830P (100% identity) | TTCANNNNNNTGG | EcoHs3IIIP |
| 5400 | S | S.EcoE2ORF4830P (100% identity) | TTCANNNNNNTGG | S.EcoHs3III |
| 5405 | M | M.EcoE2ORF4830P (100% identity) | TTCANNNNNNTGG | M.EcoHs3III |
| 5410 | DNA-binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5335 | DUF4102 domain-containing protein | |||
| 5340 | M | M.KpnFF77ORF20840P (100% identity) | GGTACC | M.EcoHs3ORF5340P |
| 5345 | zinc ribbon domain-containing protein | |||
| 8510 | 75 aa hypothetical protein | |||
| 8515 | M | M.CamC3HORF8285P (100% identity) | GATC | M.EcoHs3ORF8515P |
| 8520 | endonuclease | |||
| 10670 | PerC family transcriptional regulator | |||
| 10675 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoHs3ORF10675P |
| 10680 | LexA family transcriptional regulator | |||
| 11475 | TrmB family transcriptional regulator | |||
| 11480 | M | M.SsoCS14ORF10750P (100% identity) | A | M.EcoHs3ORF11480P |
| 11500 | 73 aa hypothetical protein | |||
| 15330 | drug/metabolite exporter YedA | |||
| 15335 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoHs3DcmP |
| 15340 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoHs3DcmP |
| 15345 | phosphohydrolase | |||
| 22515 | Fis family transcriptional regulator | |||
| 22520 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoHs3ORF22520P |
| 22525 | DUF2556 domain-containing protein | |||
| 23180 | ribulose-phosphate 3-epimerase | |||
| 23185 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoHs3DamP |
| 23190 | protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10735 | DNA-invertase | |||
| 10740 | R | EcoMB19ORF20745P (100% identity) | YCGR | EcoHs3ORF10740P |
| 10745 | isocitrate dehydrogenase | |||